Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNA5SP139-201ENST00000364340 117 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 RNU6-1180P-201ENST00000364935 107 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 RPS20P15-201ENST00000412792 311 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.09□□□□□ -2.23
USF3Q68DE3 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.09□□□□□ -2.23
USF3Q68DE3 MTCYBP7-201ENST00000419540 1134 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 IPO7P1-201ENST00000442031 636 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 RPL17P49-201ENST00000443728 411 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 MTND1P18-201ENST00000448191 573 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 AL035407.2-201ENST00000454090 378 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.09□□□□□ -2.23
USF3Q68DE3 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.09□□□□□ -2.23
USF3Q68DE3 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.09□□□□□ -2.23
USF3Q68DE3 AC012640.5-201ENST00000623897 319 ntBASIC1.09□□□□□ -2.23
USF3Q68DE3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.09□□□□□ -2.23
USF3Q68DE3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.09□□□□□ -2.23
USF3Q68DE3 RPL7P27-201ENST00000403775 720 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.09□□□□□ -2.24
USF3Q68DE3 RPL21P32-201ENST00000419877 477 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AL121601.2-201ENST00000438019 707 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 SSXP4-201ENST00000451349 245 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.09□□□□□ -2.24
USF3Q68DE3 FABP5P5-201ENST00000515537 406 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 RPPH1-2P-201ENST00000516688 293 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 MTCYBP41-201ENST00000528913 1123 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AP000907.2-201ENST00000530827 353 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.09□□□□□ -2.24
USF3Q68DE3 AC016727.2-201ENST00000603988 621 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AL133507.1-201ENST00000605269 557 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.09□□□□□ -2.24
USF3Q68DE3 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.09□□□□□ -2.24
USF3Q68DE3 AC130650.2-201ENST00000618736 2403 ntBASIC1.09□□□□□ -2.24
USF3Q68DE3 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.09□□□□□ -2.24
USF3Q68DE3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.08□□□□□ -2.24
USF3Q68DE3 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
USF3Q68DE3 RNU6-335P-201ENST00000364563 113 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 DNAJC19P6-201ENST00000401853 280 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 RNU4-72P-201ENST00000410754 173 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 MED6P1-201ENST00000439659 713 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.08□□□□□ -2.24
USF3Q68DE3 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC010301.1-201ENST00000473936 355 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC092902.1-201ENST00000486999 259 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 MTCYBP35-201ENST00000503630 1137 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC114322.1-201ENST00000506771 926 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC1.08□□□□□ -2.24
USF3Q68DE3 MTCO3P44-201ENST00000510977 541 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.08□□□□□ -2.24
USF3Q68DE3 RPL21P5-201ENST00000554662 472 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 RPS15AP11-201ENST00000594193 385 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.08□□□□□ -2.24
USF3Q68DE3 AP003122.6-201ENST00000623831 495 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC091895.1-201ENST00000624494 256 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC015726.3-201ENST00000624501 418 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC110079.1-202ENST00000635213 138 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
USF3Q68DE3 Y_RNA.374-201ENST00000365606 101 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 RNU4-65P-201ENST00000410473 140 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC023347.2-201ENST00000433994 462 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 SNRPEP4-201ENST00000435815 279 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC004223.1-201ENST00000479840 271 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 RPL30P11-201ENST00000495304 339 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 SUMO2P6-201ENST00000505273 288 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 RN7SKP49-201ENST00000516675 260 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 NPM1P52-201ENST00000518264 846 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 OSBPL9P3-201ENST00000534523 595 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.08□□□□□ -2.24
USF3Q68DE3 AC068135.2-201ENST00000569293 1028 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 COX6CP3-201ENST00000580869 223 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 MIR3660-201ENST00000584845 100 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC015849.6-201ENST00000605454 474 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AC097468.3-201ENST00000607956 456 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 MIR6078-201ENST00000611069 100 ntBASIC1.08□□□□□ -2.24
USF3Q68DE3 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.08□□□□□ -2.24
USF3Q68DE3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
USF3Q68DE3 RN7SKP51-201ENST00000410781 304 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.07□□□□□ -2.24
USF3Q68DE3 MTCO3P46-201ENST00000425787 232 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.07□□□□□ -2.24
USF3Q68DE3 RPL35AP22-201ENST00000436855 335 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AP000949.1-201ENST00000438328 629 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 MTCO1P48-201ENST00000448024 1096 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 RPS27P21-201ENST00000486977 252 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 RNU2-44P-201ENST00000516795 194 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.07□□□□□ -2.24
USF3Q68DE3 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC1.07□□□□□ -2.24
USF3Q68DE3 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.07□□□□□ -2.24
USF3Q68DE3 RNU6-600P-201ENST00000362524 99 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 SNORA40.6-201ENST00000391153 128 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 ERHP2-201ENST00000402323 299 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AL138880.1-201ENST00000405824 642 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.07□□□□□ -2.24
USF3Q68DE3 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 UBE2V1P13-201ENST00000436983 439 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms