Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.84□□□□□ -1.63
SF3A1Q15459 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.84□□□□□ -1.63
SF3A1Q15459 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.84□□□□□ -1.63
SF3A1Q15459 AL512844.2-201ENST00000433990 593 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.84□□□□□ -1.63
SF3A1Q15459 AL356535.1-201ENST00000440335 398 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.84□□□□□ -1.63
SF3A1Q15459 RN7SL810P-201ENST00000493031 276 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 AC069439.1-201ENST00000494739 167 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 RPL30P5-201ENST00000494923 336 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.84□□□□□ -1.63
SF3A1Q15459 PRDX4P1-201ENST00000507189 574 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 APOOP4-201ENST00000513530 597 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 RNU4-29P-201ENST00000515943 174 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 RNU6-685P-201ENST00000517088 95 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 AC063950.1-201ENST00000552036 308 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 TRAV28-201ENST00000557548 323 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 MTCO3P24-201ENST00000572729 782 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.84□□□□□ -1.63
SF3A1Q15459 AL161798.1-201ENST00000604630 131 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.84□□□□□ -1.63
SF3A1Q15459 AC008785.1-201ENST00000624475 456 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 MTND1P37-201ENST00000636562 264 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 ZNF962P-201ENST00000443465 3140 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.84□□□□□ -1.63
SF3A1Q15459 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SF3A1Q15459 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SF3A1Q15459 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SF3A1Q15459 AL158163.1-201ENST00000603915 1649 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SF3A1Q15459 AC090740.1-201ENST00000623193 2262 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 SNORD74.4-201ENST00000364129 80 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC068538.1-201ENST00000376856 336 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AL139039.1-201ENST00000401900 692 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 FAT1P1-201ENST00000406588 507 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 RNA5SP104-201ENST00000410989 118 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC004552.1-201ENST00000419089 348 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 SNRPEP10-201ENST00000420249 274 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.83□□□□□ -1.64
SF3A1Q15459 Z82210.1-201ENST00000440037 231 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 WASF1P1-201ENST00000447560 1131 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC104058.1-201ENST00000448028 297 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AL162151.2-201ENST00000448875 158 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 RNA5SP310-201ENST00000459084 116 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 RPS26P3-201ENST00000470205 348 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.83□□□□□ -1.64
SF3A1Q15459 AC090543.2-201ENST00000483963 348 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC004057.1-201ENST00000485827 348 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.83□□□□□ -1.64
SF3A1Q15459 RNU6-914P-201ENST00000516749 109 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 SNORD60.2-201ENST00000516883 86 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 SUB1P1-201ENST00000524415 382 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.83□□□□□ -1.64
SF3A1Q15459 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SF3A1Q15459 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.83□□□□□ -1.64
SF3A1Q15459 AC136624.4-201ENST00000573044 370 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC008638.3-201ENST00000603341 463 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC012603.1-201ENST00000606424 528 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 MIR15A-201ENST00000607334 83 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 AC079684.1-201ENST00000621405 437 ntBASIC4.83□□□□□ -1.64
SF3A1Q15459 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.83□□□□□ -1.64
SF3A1Q15459 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.83□□□□□ -1.64
SF3A1Q15459 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SF3A1Q15459 RPL7P26-201ENST00000333817 754 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.82□□□□□ -1.64
SF3A1Q15459 RNU1-14P-201ENST00000362759 152 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 RNA5SP447-201ENST00000363749 119 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 MTND4LP11-201ENST00000422184 280 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 RPS29P17-201ENST00000430795 166 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 GPM6BP2-201ENST00000432046 144 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 CALM1P1-201ENST00000442082 433 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 GPM6BP1-201ENST00000446387 144 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 RPL23AP24-201ENST00000458203 385 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 AC103987.1-201ENST00000473394 348 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 RPS15AP34-201ENST00000487776 387 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 RN7SL691P-201ENST00000494487 301 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 AC025445.1-201ENST00000502728 300 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 RNA5SP519-201ENST00000516480 119 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 CASP1P1-201ENST00000526345 212 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.82□□□□□ -1.64
SF3A1Q15459 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 MIR4277-201ENST00000578298 84 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.82□□□□□ -1.64
SF3A1Q15459 AL020997.2-201ENST00000602607 184 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.82□□□□□ -1.64
SF3A1Q15459 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.82□□□□□ -1.64
SF3A1Q15459 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.82□□□□□ -1.64
SF3A1Q15459 Z99571.1-201ENST00000636677 394 ntBASIC4.82□□□□□ -1.64
SF3A1Q15459 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SF3A1Q15459 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.82□□□□□ -1.64
SF3A1Q15459 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SF3A1Q15459 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms