Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.87□□□□□ -1.47
COL9A1P20849 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.87□□□□□ -1.47
COL9A1P20849 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
COL9A1P20849 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 RNU6-103P-201ENST00000363686 107 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 Y_RNA.172-201ENST00000363765 102 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 CTSL3P-202ENST00000412179 788 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 MYL6P5-201ENST00000412707 459 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 CYCSP32-201ENST00000440548 321 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 RN7SKP164-201ENST00000516138 266 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 RNU6-1198P-201ENST00000516904 67 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 AC022968.1-201ENST00000567372 442 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 AP005403.1-201ENST00000579720 229 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 MIR5096-201ENST00000583713 70 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 MIR6129-201ENST00000616087 109 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 SAGE2P-201ENST00000420011 2126 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 AC018529.3-201ENST00000624212 2254 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.87□□□□□ -1.47
COL9A1P20849 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 AC022164.1-201ENST00000568767 2673 ntBASIC5.87□□□□□ -1.47
COL9A1P20849 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.87□□□□□ -1.47
COL9A1P20849 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.86□□□□□ -1.47
COL9A1P20849 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
COL9A1P20849 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 AC112243.1-201ENST00000623949 3851 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.86□□□□□ -1.47
COL9A1P20849 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL9A1P20849 GTF2IP4-201ENST00000453092 2054 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL9A1P20849 AL159987.1-201ENST00000347911 293 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 SNORA72.2-201ENST00000365028 127 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 Y_RNA.319-201ENST00000365138 92 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 Y_RNA.337-201ENST00000365312 102 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 SNORA37-201ENST00000384504 129 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 RN7SKP151-201ENST00000410230 316 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 RPL7AP25-201ENST00000423357 805 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 Z82210.1-201ENST00000440037 231 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 AC023141.8-201ENST00000442554 208 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 RPL7AP61-201ENST00000443410 636 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 FABP5P15-201ENST00000453566 214 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 AL121594.1-201ENST00000475906 575 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 HSPE1P6-201ENST00000479457 291 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 AC068522.1-201ENST00000482895 345 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 AF186996.7-201ENST00000492781 209 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 FCF1P8-201ENST00000510322 597 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.86□□□□□ -1.47
COL9A1P20849 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.86□□□□□ -1.47
COL9A1P20849 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.86□□□□□ -1.47
COL9A1P20849 MRPS21P9-201ENST00000571150 257 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 MIR4744-201ENST00000581563 82 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 MIR132-201ENST00000591554 101 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.86□□□□□ -1.47
COL9A1P20849 ZNF402P-201ENST00000404435 3100 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 AC005332.5-201ENST00000591222 2919 ntBASIC5.86□□□□□ -1.47
COL9A1P20849 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL9A1P20849 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.86□□□□□ -1.47
COL9A1P20849 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.86□□□□□ -1.47
COL9A1P20849 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL9A1P20849 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.86□□□□□ -1.47
COL9A1P20849 AC009812.4-201ENST00000569134 1805 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.85□□□□□ -1.47
COL9A1P20849 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.85□□□□□ -1.47
COL9A1P20849 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.85□□□□□ -1.47
COL9A1P20849 INTS6P1-201ENST00000504674 2530 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.85□□□□□ -1.47
COL9A1P20849 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.85□□□□□ -1.47
COL9A1P20849 AC010329.1-201ENST00000593903 8328 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 RNA5SP515-201ENST00000364570 118 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.85□□□□□ -1.47
COL9A1P20849 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 RNU6-578P-201ENST00000390980 103 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 RNU6-159P-201ENST00000391080 106 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 RNU6-381P-201ENST00000391259 108 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms