Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.07□□□□□ -2.24
VCANP13611 RNA5SP233-201ENST00000459153 113 ntBASIC1.07□□□□□ -2.24
VCANP13611 AP003499.2-201ENST00000624100 483 ntBASIC1.07□□□□□ -2.24
VCANP13611 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.07□□□□□ -2.24
VCANP13611 RPL23AP62-201ENST00000463396 453 ntBASIC1.07□□□□□ -2.24
VCANP13611 SNORA48.9-201ENST00000516419 162 ntBASIC1.07□□□□□ -2.24
VCANP13611 AC023050.2-201ENST00000544968 387 ntBASIC1.07□□□□□ -2.24
VCANP13611 MIR6857-201ENST00000613267 93 ntBASIC1.07□□□□□ -2.24
VCANP13611 RNU11-5P-201ENST00000391216 129 ntBASIC1.06□□□□□ -2.24
VCANP13611 RPL30P4-201ENST00000429309 333 ntBASIC1.06□□□□□ -2.24
VCANP13611 snoU13.19-201ENST00000459148 104 ntBASIC1.06□□□□□ -2.24
VCANP13611 AC096751.1-202ENST00000502691 1067 ntBASIC1.06□□□□□ -2.24
VCANP13611 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.06□□□□□ -2.24
VCANP13611 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
VCANP13611 Y_RNA.132-201ENST00000363421 102 ntBASIC1.06□□□□□ -2.24
VCANP13611 RNY3-201ENST00000365484 102 ntBASIC1.06□□□□□ -2.24
VCANP13611 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.06□□□□□ -2.24
VCANP13611 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.06□□□□□ -2.24
VCANP13611 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.06□□□□□ -2.24
VCANP13611 AC024595.1-201ENST00000623088 387 ntBASIC1.06□□□□□ -2.24
VCANP13611 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
VCANP13611 AP000949.1-201ENST00000438328 629 ntBASIC1.05□□□□□ -2.24
VCANP13611 AC087465.1-201ENST00000560574 245 ntBASIC1.05□□□□□ -2.24
VCANP13611 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
VCANP13611 MTND5P25-201ENST00000430499 799 ntBASIC1.05□□□□□ -2.24
VCANP13611 AC121161.1-201ENST00000510606 652 ntBASIC1.05□□□□□ -2.24
VCANP13611 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
VCANP13611 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.05□□□□□ -2.24
VCANP13611 RNU6-1235P-201ENST00000384559 107 ntBASIC1.05□□□□□ -2.24
VCANP13611 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.05□□□□□ -2.24
VCANP13611 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.05□□□□□ -2.24
VCANP13611 RNU6-498P-201ENST00000459468 107 ntBASIC1.05□□□□□ -2.24
VCANP13611 Z69720.2-201ENST00000624755 279 ntBASIC1.05□□□□□ -2.24
VCANP13611 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
VCANP13611 VTRNA1-1-201ENST00000363120 99 ntBASIC1.04□□□□□ -2.24
VCANP13611 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
VCANP13611 RNU6-43P-201ENST00000384302 107 ntBASIC1.04□□□□□ -2.24
VCANP13611 OR51A5P-201ENST00000415429 942 ntBASIC1.04□□□□□ -2.24
VCANP13611 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.04□□□□□ -2.24
VCANP13611 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC1.04□□□□□ -2.24
VCANP13611 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
VCANP13611 RNU4-38P-201ENST00000364472 129 ntBASIC1.04□□□□□ -2.24
VCANP13611 AC074117.2-201ENST00000417130 397 ntBASIC1.04□□□□□ -2.24
VCANP13611 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.04□□□□□ -2.24
VCANP13611 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.04□□□□□ -2.24
VCANP13611 PSMA2P3-201ENST00000429685 675 ntBASIC1.04□□□□□ -2.24
VCANP13611 AL512661.1-201ENST00000434586 1253 ntBASIC1.04□□□□□ -2.24
VCANP13611 AL121871.1-201ENST00000443413 436 ntBASIC1.04□□□□□ -2.24
VCANP13611 AC087808.1-201ENST00000520501 361 ntBASIC1.04□□□□□ -2.24
VCANP13611 PABPC1P7-201ENST00000413177 1513 ntBASIC1.03□□□□□ -2.24
VCANP13611 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
VCANP13611 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.03□□□□□ -2.24
VCANP13611 RNU6-16P-201ENST00000384385 107 ntBASIC1.03□□□□□ -2.24
VCANP13611 RPL23AP41-201ENST00000484754 458 ntBASIC1.03□□□□□ -2.24
VCANP13611 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.03□□□□□ -2.24
VCANP13611 AC008962.1-201ENST00000605729 304 ntBASIC1.03□□□□□ -2.24
VCANP13611 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.03□□□□□ -2.24
VCANP13611 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
VCANP13611 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.03□□□□□ -2.24
VCANP13611 RNU6-203P-201ENST00000384038 104 ntBASIC1.03□□□□□ -2.24
VCANP13611 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.03□□□□□ -2.24
VCANP13611 AC012497.1-201ENST00000429392 575 ntBASIC1.03□□□□□ -2.24
VCANP13611 AC089999.1-201ENST00000460336 374 ntBASIC1.03□□□□□ -2.24
VCANP13611 RPL30P12-201ENST00000474666 353 ntBASIC1.03□□□□□ -2.24
VCANP13611 RNA5SP364-201ENST00000516938 78 ntBASIC1.03□□□□□ -2.24
VCANP13611 AC011330.2-201ENST00000621680 635 ntBASIC1.03□□□□□ -2.24
VCANP13611 AC067852.7-201ENST00000623270 535 ntBASIC1.03□□□□□ -2.24
VCANP13611 OR5AQ1P-202ENST00000641257 1534 ntBASIC1.03□□□□□ -2.25
VCANP13611 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.25
VCANP13611 RPL7P27-201ENST00000403775 720 ntBASIC1.02□□□□□ -2.25
VCANP13611 OR6K5P-201ENST00000447050 945 ntBASIC1.02□□□□□ -2.25
VCANP13611 AC013244.3-201ENST00000605614 388 ntBASIC1.02□□□□□ -2.25
VCANP13611 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.02□□□□□ -2.25
VCANP13611 AC092140.2-201ENST00000618027 521 ntBASIC1.02□□□□□ -2.25
VCANP13611 AC002550.2-201ENST00000621246 394 ntBASIC1.02□□□□□ -2.25
VCANP13611 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
VCANP13611 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
VCANP13611 SNORA2A-201ENST00000383885 135 ntBASIC1.02□□□□□ -2.25
VCANP13611 AL031663.1-201ENST00000437445 219 ntBASIC1.02□□□□□ -2.25
VCANP13611 CFTRP1-201ENST00000456646 183 ntBASIC1.02□□□□□ -2.25
VCANP13611 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.02□□□□□ -2.25
VCANP13611 AC073544.1-201ENST00000600110 1595 ntBASIC1.02□□□□□ -2.25
VCANP13611 CENPCP1-201ENST00000533085 2578 ntBASIC1.02□□□□□ -2.25
VCANP13611 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.02□□□□□ -2.25
VCANP13611 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
VCANP13611 RNU1-23P-201ENST00000363361 144 ntBASIC1.01□□□□□ -2.25
VCANP13611 Y_RNA.571-201ENST00000384753 98 ntBASIC1.01□□□□□ -2.25
VCANP13611 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.01□□□□□ -2.25
VCANP13611 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.01□□□□□ -2.25
VCANP13611 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.01□□□□□ -2.25
VCANP13611 AL121601.2-201ENST00000438019 707 ntBASIC1.01□□□□□ -2.25
VCANP13611 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC1.01□□□□□ -2.25
VCANP13611 AC010265.1-201ENST00000513509 211 ntBASIC1.01□□□□□ -2.25
VCANP13611 RNA5SP285-201ENST00000516619 119 ntBASIC1.01□□□□□ -2.25
VCANP13611 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.01□□□□□ -2.25
VCANP13611 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.01□□□□□ -2.25
VCANP13611 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
VCANP13611 FTH1P15-201ENST00000406984 280 ntBASIC1□□□□□ -2.25
VCANP13611 RNA5SP266-201ENST00000410273 108 ntBASIC1□□□□□ -2.25
VCANP13611 MTCO1P43-201ENST00000431831 488 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms