Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 RNU5E-8P-201ENST00000363502 116 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 RNU5A-8P-201ENST00000364102 114 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 RNA5SP235-201ENST00000365411 114 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 RNY3P13-201ENST00000365542 102 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 U8.11-201ENST00000384699 133 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 U8.12-201ENST00000384701 133 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 MIR454-201ENST00000390180 115 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 HSPE1P1-201ENST00000421494 318 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 BEND7P1-201ENST00000422058 457 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A1P12109 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 U8.18-201ENST00000459285 133 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
COL6A1P12109 AP001086.1-201ENST00000494882 321 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AL139099.1-201ENST00000497398 403 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AC091885.1-201ENST00000506658 268 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A1P12109 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A1P12109 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A1P12109 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.63□□□□□ -1.67
COL6A1P12109 AC026464.5-201ENST00000562497 722 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AC022655.2-201ENST00000577280 318 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 MIR3171-201ENST00000584270 74 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AL592436.1-201ENST00000605135 558 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 AC015967.1-201ENST00000619893 476 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 EXOC5P1-201ENST00000510543 1969 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 LINC01355-201ENST00000566551 5444 ntBASIC4.63□□□□□ -1.67
COL6A1P12109 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL6A1P12109 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 MAPK10-303ENST00000641324 3959 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 RNU6-1249P-201ENST00000363237 111 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 MIR514A2-201ENST00000385131 88 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 MIR514A3-201ENST00000385132 88 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 MIR559-201ENST00000385188 96 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 Y_RNA.615-201ENST00000410769 117 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 SNORA57.3-201ENST00000411095 141 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A1P12109 AL691449.1-201ENST00000426570 421 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 GTF2IP13-201ENST00000438487 386 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 SNORA59A-201ENST00000459326 152 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 MTCO1P29-201ENST00000496868 288 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 RN7SKP46-201ENST00000515942 234 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A1P12109 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.62□□□□□ -1.67
COL6A1P12109 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A1P12109 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 AC011471.1-201ENST00000585766 187 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AP001029.3-201ENST00000588063 596 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 AL160290.3-201ENST00000604869 165 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC116312.1-201ENST00000606841 314 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 Z98200.1-201ENST00000607298 470 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC004908.2-201ENST00000609090 574 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC008121.3-201ENST00000618726 433 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.62□□□□□ -1.67
COL6A1P12109 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.62□□□□□ -1.67
COL6A1P12109 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
COL6A1P12109 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.62□□□□□ -1.67
COL6A1P12109 AP004289.2-201ENST00000444413 1457 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A1P12109 AL672167.1-203ENST00000641299 2975 ntBASIC4.62□□□□□ -1.67
COL6A1P12109 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A1P12109 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 AC067945.1-201ENST00000342609 618 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 Y_RNA.202-201ENST00000364083 110 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 SNORA5A-201ENST00000384111 134 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 RNU6-1297P-201ENST00000384415 104 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 Y_RNA.579-201ENST00000390939 94 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 RN7SKP156-201ENST00000410308 342 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 SYF2P2-201ENST00000417620 583 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AL391219.1-201ENST00000422570 483 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 VDAC1P3-201ENST00000434069 851 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 RPL23AP46-201ENST00000438548 490 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A1P12109 AC007967.1-201ENST00000455422 1159 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AL590639.1-201ENST00000456484 337 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 AL445433.1-201ENST00000457507 257 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 RNU7-182P-201ENST00000459009 62 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 RPL21P99-201ENST00000480369 423 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 RPL23AP55-201ENST00000498163 452 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms