Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MRPS17P3-201ENST00000465453 385 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 BZW1P2-201ENST00000473537 826 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 RPL30P6-201ENST00000475925 342 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 RPF2P2-201ENST00000504693 896 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 SUMO2P6-201ENST00000505273 288 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC009901.1-201ENST00000506703 541 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 Y_RNA.717-201ENST00000517106 92 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 RNU6-232P-201ENST00000517144 64 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 MTCO1P47-201ENST00000523889 1271 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC103843.2-201ENST00000530523 682 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 ZNF519P3-201ENST00000557158 1032 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 MIR3158-1-201ENST00000583596 81 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC098826.3-201ENST00000603823 466 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC004805.2-201ENST00000605382 482 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC105129.3-201ENST00000605455 485 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 U3.45-201ENST00000607547 219 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AL391813.2-201ENST00000609113 322 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 uc_338.12-201ENST00000616344 181 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC006133.1-201ENST00000617106 264 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 FRG1KP-201ENST00000623592 341 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC090617.7-201ENST00000623952 126 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 SRP72P2-201ENST00000344851 1979 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RNY4P16-201ENST00000364768 94 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RNU6-701P-201ENST00000384059 107 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RPS7P13-201ENST00000413955 498 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 SYF2P2-201ENST00000417620 583 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 GPM6BP2-201ENST00000432046 144 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 MTND1P28-201ENST00000435623 950 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC092641.1-201ENST00000440229 772 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 GPM6BP1-201ENST00000446387 144 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RPL21P23-201ENST00000446654 460 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 PDSS1P2-201ENST00000449397 678 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL590365.1-201ENST00000450788 243 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC097262.1-201ENST00000452559 548 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 CECR9-201ENST00000453421 199 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 RPL36AP51-201ENST00000487216 318 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC005178.1-201ENST00000508392 440 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 MRPS33P3-201ENST00000513456 322 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 SNORA70.18-201ENST00000516696 98 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 SUB1P1-201ENST00000524415 382 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC087373.1-201ENST00000524920 491 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC010620.2-201ENST00000600135 313 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC006557.5-201ENST00000603126 811 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL359999.1-201ENST00000604513 294 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AL355816.2-201ENST00000610049 647 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 U4.6-201ENST00000621618 127 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AF246928.1-201ENST00000623768 87 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC079248.2-201ENST00000623779 326 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC068057.2-201ENST00000624047 895 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA2Q9Y261 AC092104.1-201ENST00000497346 1441 ntBASIC2.76□□□□□ -1.97
FOXA2Q9Y261 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
FOXA2Q9Y261 ZNF519P1-201ENST00000449011 1626 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 AL049781.1-201ENST00000623195 3585 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.75□□□□□ -1.97
FOXA2Q9Y261 UBE2L2-201ENST00000254302 429 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
FOXA2Q9Y261 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
FOXA2Q9Y261 FCF1P10-201ENST00000407590 479 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 RN7SKP111-201ENST00000410349 271 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 RN7SKP220-201ENST00000410611 288 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 RNU6-920P-201ENST00000410926 92 ntBASIC2.75□□□□□ -1.97
FOXA2Q9Y261 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA2Q9Y261 Z99755.1-201ENST00000414048 380 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms