Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 KC877373.1-201ENST00000479066 408 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 RPS3AP43-201ENST00000479743 781 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC109486.1-201ENST00000486833 374 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 MTND4LP22-201ENST00000508209 276 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 RNU6-928P-201ENST00000516876 104 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 MIR2276-201ENST00000516886 89 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 MTND3P12-201ENST00000559068 328 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 MIR5697-201ENST00000578045 78 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL161729.4-201ENST00000604650 476 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC012360.2-201ENST00000609349 391 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC108747.1-201ENST00000609508 535 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC097520.1-201ENST00000624435 385 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC007494.3-201ENST00000624660 743 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 MTND1P37-201ENST00000636562 264 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS28Q9UK41 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 GABRG2-229ENST00000641017 3628 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 Z83843.1-201ENST00000604070 3685 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 RNU2-62P-201ENST00000410868 191 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC126124.2-201ENST00000413542 321 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC092047.1-201ENST00000424997 240 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AL445567.1-201ENST00000439121 144 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC008264.1-201ENST00000447612 367 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC125238.1-201ENST00000448842 249 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 RPS27P29-201ENST00000463110 252 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 RPL21P8-201ENST00000465083 535 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC104472.2-201ENST00000469035 601 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 RNU6-927P-201ENST00000516199 100 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC107934.2-201ENST00000518653 310 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 MTCO3P24-201ENST00000572729 782 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 MIR3915-201ENST00000578518 97 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AL162713.1-201ENST00000604480 262 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC096577.2-201ENST00000611455 153 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC027807.2-201ENST00000616099 408 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 uc_338.12-201ENST00000616344 181 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC104010.1-201ENST00000616889 150 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 AC019226.2-201ENST00000625973 424 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 SNORA50A-202ENST00000629536 136 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.44□□□□□ -1.86
VPS28Q9UK41 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS28Q9UK41 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS28Q9UK41 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 ZNF833P-201ENST00000424938 1494 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS28Q9UK41 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS28Q9UK41 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 RNU6-270P-201ENST00000364131 105 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 Y_RNA.333-201ENST00000365274 102 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 RNU5E-5P-201ENST00000365379 116 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 EI24P2-201ENST00000397776 1076 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 USP9YP13-201ENST00000417797 480 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC006366.1-201ENST00000422002 759 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC005326.1-201ENST00000429197 123 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC016696.1-201ENST00000446949 318 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC013267.1-201ENST00000458227 267 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC092798.1-201ENST00000458542 409 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 snoU13.28-201ENST00000459235 104 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 RN7SKP258-201ENST00000517151 304 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC104027.1-201ENST00000521887 300 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 DNAJC8P1-201ENST00000554535 372 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 ROCK1P1-201ENST00000573767 549 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 AL391813.2-201ENST00000609113 322 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS28Q9UK41 AL356274.2-201ENST00000624379 3752 ntBASIC3.43□□□□□ -1.86
VPS28Q9UK41 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS28Q9UK41 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms