Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 HMGB1P28-201ENST00000507778 552 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 RNU6-840P-201ENST00000517275 65 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AP003049.1-201ENST00000529418 457 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 HIGD1AP17-201ENST00000554576 276 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC136624.4-201ENST00000573044 370 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC013562.2-201ENST00000611632 603 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AC013476.2-201ENST00000614456 459 ntBASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VCX3AQ9NNX9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 MTND4P35-201ENST00000604257 1375 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 SNORA38-201ENST00000363946 132 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 SNORA23-201ENST00000365128 182 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 RPL7P27-201ENST00000403775 720 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 RN7SKP140-201ENST00000411196 284 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 MTATP6P11-201ENST00000428071 670 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 MTND2P20-201ENST00000440805 661 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 snoU13.8-201ENST00000458890 104 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC008837.1-201ENST00000511513 412 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 RNU6-714P-201ENST00000516963 103 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 SLC2A13P1-201ENST00000531560 322 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AP000403.1-201ENST00000603349 851 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 DUXAP9-208ENST00000622815 614 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC068880.4-201ENST00000623082 495 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC006927.2-201ENST00000639256 389 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 CDR1-202ENST00000625883 1485 ntBASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.13□□□□□ -2.07
VCX3AQ9NNX9 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 MIR422A-201ENST00000362286 90 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 Y_RNA.408-201ENST00000383987 102 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 U3.26-201ENST00000391236 204 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 RNU6-920P-201ENST00000410926 92 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 GTF2IP7-202ENST00000436677 309 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 RPL23AP7-203ENST00000449021 469 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AL021397.1-201ENST00000451806 248 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 RPS20P22-201ENST00000473700 357 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 RN7SL274P-201ENST00000492268 272 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC023141.11-201ENST00000508864 202 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 SNORA31.6-201ENST00000516241 130 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 RNA5SP291-201ENST00000517222 105 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 DUXAP2-201ENST00000519198 589 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 BTF3P12-201ENST00000519620 469 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 CCNG2P1-201ENST00000549521 1000 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC023825.1-201ENST00000566704 1030 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC021749.1-201ENST00000604322 607 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC025594.3-201ENST00000613068 790 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AC012442.3-202ENST00000636742 206 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 AP005901.5-201ENST00000545779 1796 ntBASIC2.12□□□□□ -2.07
VCX3AQ9NNX9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 AC004520.1-201ENST00000608362 1413 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 RNA5SP68-201ENST00000363885 119 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 RNU6-1078P-201ENST00000364522 103 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 RNU6-637P-201ENST00000384050 107 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 SNORA18.3-201ENST00000384122 132 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 RNU6-952P-201ENST00000391164 108 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 MIR888-201ENST00000401186 77 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 AL591416.1-201ENST00000404015 867 ntBASIC2.11□□□□□ -2.07
VCX3AQ9NNX9 AL030996.1-201ENST00000411430 235 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms