Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RN7SL517P-201ENST00000462240 305 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC104472.2-201ENST00000469035 601 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC073073.1-201ENST00000493920 463 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RPS27P27-201ENST00000498779 255 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC008526.1-201ENST00000509149 338 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RNU6-572P-201ENST00000516724 80 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC011602.1-201ENST00000546484 331 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC093027.1-201ENST00000546698 429 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 OR1M4P-201ENST00000589199 287 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RNU6-85P-201ENST00000605989 107 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL731566.1-201ENST00000620490 1937 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 ZNF807-201ENST00000328088 1707 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 FTLP6-201ENST00000355274 422 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RNU1-32P-201ENST00000363937 159 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RNU6-217P-201ENST00000384164 104 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 MIR141-201ENST00000384975 95 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.623-201ENST00000411128 95 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 BRK1P2-201ENST00000442875 223 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AL078601.1-201ENST00000444542 271 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC073587.1-201ENST00000447093 876 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 NDUFB1P2-201ENST00000449477 176 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 DHFRP3-201ENST00000455595 559 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC139453.3-201ENST00000493276 369 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 HMGB3P16-201ENST00000508037 287 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RN7SKP24-201ENST00000515888 284 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RNU6-277P-201ENST00000516272 106 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.719-201ENST00000517156 106 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 SNORA25.17-201ENST00000517184 124 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 IGKV2OR2-8-201ENST00000558710 300 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 MIR4782-201ENST00000577987 79 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC008745.1-201ENST00000604064 271 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 FTX_3.1-201ENST00000610451 147 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AL138726.1-201ENST00000614873 333 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 RMST_4.1-201ENST00000616886 107 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 MIR6076-201ENST00000617521 113 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC008013.2-202ENST00000637965 364 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 AC126323.6-202ENST00000568092 3511 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 MAPK10-263ENST00000641052 4307 ntBASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TRAIPQ9BWF2 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 FRG1CP-201ENST00000358464 769 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RNA5SP505-201ENST00000364748 108 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 U3.30-201ENST00000391308 210 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 HSPE1P12-201ENST00000412576 301 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 TBCAP2-201ENST00000416175 326 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 MTCO2P27-201ENST00000420740 428 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 EIF4EP1-201ENST00000422311 642 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 HMGB1P9-201ENST00000429856 646 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC007389.2-201ENST00000434630 306 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RPL32P28-201ENST00000443577 397 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RPL37P4-201ENST00000448908 268 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC233279.1-201ENST00000455300 423 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RPL12P25-201ENST00000455592 494 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC087884.1-201ENST00000469738 328 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC068587.1-201ENST00000483613 781 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms