Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS4XP22-201ENST00000480755 780 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 TAF8-207ENST00000482432 556 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC114967.1-201ENST00000504890 259 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 VN1R104P-201ENST00000505115 1009 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 RNA5SP337-201ENST00000517007 109 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 ZNF415P1-201ENST00000582279 1166 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AL451064.1-201ENST00000607718 471 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC103710.2-201ENST00000609912 942 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 HULC.1-201ENST00000612720 240 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 MIR6075-201ENST00000620782 95 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AP003355.3-201ENST00000623465 114 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC110801.1-201ENST00000623590 212 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC009093.8-201ENST00000641769 292 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 MAPK10-362ENST00000641864 4484 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC092326.2-201ENST00000624772 1561 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 RNU6-173P-201ENST00000364215 104 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 MIR449B-201ENST00000384995 97 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 AL109755.1-201ENST00000401791 649 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 MRPL42P2-201ENST00000403169 426 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 RNA5SP129-201ENST00000410276 118 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 CRYBB2P1-203ENST00000415709 538 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 UBE2D3P2-201ENST00000424409 445 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 AL121871.1-201ENST00000443413 436 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 MTATP6P30-201ENST00000443540 664 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 ELOCP30-201ENST00000447108 299 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC091153.1-201ENST00000466297 402 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 MTCO2P32-201ENST00000514865 403 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 SNORA70.19-201ENST00000516717 90 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 MIR3944-201ENST00000581277 108 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC010591.1-201ENST00000603941 649 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 AL161729.4-201ENST00000604650 476 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 SNORA51-201ENST00000606420 132 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 U3.45-201ENST00000607547 219 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 AC084757.4-201ENST00000616350 526 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 DDX10P1-201ENST00000448545 1933 ntBASIC2.97□□□□□ -1.93
NKX3-1Q99801 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
NKX3-1Q99801 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.97□□□□□ -1.93
NKX3-1Q99801 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.96□□□□□ -1.93
NKX3-1Q99801 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC093010.3-201ENST00000570269 15214 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 Y_RNA.41-201ENST00000362646 102 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 DEFB109C-201ENST00000382575 264 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 DEFB109B-201ENST00000382656 264 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 MIR218-2-201ENST00000385006 110 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RNU6-278P-201ENST00000390945 109 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RPL23AP32-201ENST00000395315 459 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RNU2-66P-201ENST00000410650 161 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC127391.1-201ENST00000411737 98 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 RPL21P24-201ENST00000413752 448 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 C1DP2-201ENST00000418167 426 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 YPEL5P1-201ENST00000419731 367 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 RPL23AP82-202ENST00000427528 469 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC104651.1-201ENST00000427559 735 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RPL31P35-201ENST00000431058 377 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 NEK4P1-201ENST00000433383 879 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms