Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL031679.1-201ENST00000400616 525 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AL389915.1-201ENST00000422463 466 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.25□□□□□ -1.89
USP28Q96RU2 PSMA6P3-201ENST00000428242 164 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AL831737.1-201ENST00000441288 271 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 GDI2P2-201ENST00000445131 608 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 MTCO2P18-201ENST00000457151 658 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC093677.1-201ENST00000514414 678 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.25□□□□□ -1.89
USP28Q96RU2 AC012065.4-201ENST00000602445 679 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC005046.1-201ENST00000608515 625 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC069234.5-201ENST00000611056 416 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 AC011939.3-201ENST00000613686 466 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 ATP5A1P2-202ENST00000616464 443 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USP28Q96RU2 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP28Q96RU2 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP28Q96RU2 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
USP28Q96RU2 Y_RNA.548-201ENST00000384656 105 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 SNORD116-4-201ENST00000384733 96 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 SNORA48.5-201ENST00000391143 135 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 U3.29-201ENST00000391296 212 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP28Q96RU2 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC007742.1-201ENST00000425789 329 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC093151.1-201ENST00000427711 313 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 ELOCP26-201ENST00000436067 329 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.24□□□□□ -1.89
USP28Q96RU2 ARPC3P5-201ENST00000448802 534 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.24□□□□□ -1.89
USP28Q96RU2 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.24□□□□□ -1.89
USP28Q96RU2 RPS29P26-201ENST00000477483 171 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC103975.1-201ENST00000482506 483 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC093809.1-201ENST00000509155 340 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC002456.2-201ENST00000509356 380 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 COX6CP8-201ENST00000522620 226 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC022861.1-201ENST00000522981 663 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 ERHP1-201ENST00000523006 310 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 HSPA8P13-201ENST00000523715 472 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC024909.2-201ENST00000553035 286 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.24□□□□□ -1.89
USP28Q96RU2 PCMTD1P2-201ENST00000565017 355 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.24□□□□□ -1.89
USP28Q96RU2 BBIP1P1-201ENST00000602999 279 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AP000403.1-201ENST00000603349 851 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 BCRP9-201ENST00000605312 388 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AL390208.1-201ENST00000605885 644 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC006329.2-201ENST00000611491 394 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 MIR6798-201ENST00000612887 67 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AL445264.1-201ENST00000621719 171 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC004009.2-201ENST00000623016 728 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.24□□□□□ -1.89
USP28Q96RU2 MIR3651-201ENST00000630427 90 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 MIR6733-201ENST00000635723 61 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC093010.3-201ENST00000570269 15214 ntBASIC3.24□□□□□ -1.89
USP28Q96RU2 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.24□□□□□ -1.89
USP28Q96RU2 AC010733.2-201ENST00000589496 5702 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP28Q96RU2 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP28Q96RU2 Y_RNA.359-201ENST00000365498 102 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 U8.14-201ENST00000390843 143 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AL590233.1-201ENST00000430017 456 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 MTND1P28-201ENST00000435623 950 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 RPL23AP74-201ENST00000437246 471 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.23□□□□□ -1.89
USP28Q96RU2 USP9YP29-201ENST00000445112 563 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 BMI1P1-201ENST00000445879 941 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 NIPA2P5-201ENST00000452282 464 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 RPL7P49-201ENST00000471402 708 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.23□□□□□ -1.89
USP28Q96RU2 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
USP28Q96RU2 MTND4P2-201ENST00000507767 1203 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC034159.1-201ENST00000513885 583 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC091826.1-201ENST00000514065 313 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 MTND5P4-201ENST00000514978 288 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 OR4P1P-201ENST00000530808 1136 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms