Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORD116-29-201ENST00000384516 83 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RNA5SP372-201ENST00000390836 115 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AL591416.1-201ENST00000404015 867 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RNU4-25P-201ENST00000410569 230 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RNA5SP104-201ENST00000410989 118 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC245054.2-201ENST00000415639 319 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AL353748.1-201ENST00000440753 474 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RPL23AP24-201ENST00000458203 385 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC011276.1-201ENST00000469688 323 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RPS27AP1-201ENST00000475545 471 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 HSPE1P6-201ENST00000479457 291 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 FAM60DP-201ENST00000524174 632 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 Z84480.1-201ENST00000605131 311 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AL354950.2-201ENST00000617939 290 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AC027290.2-201ENST00000623210 18662 ntBASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.33□□□□□ -1.72
CLIP3Q96DZ5 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 OR5P1P-201ENST00000299512 925 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RNU5A-1-201ENST00000362698 116 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 SNORA70.2-201ENST00000364506 135 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RNA5SP509-201ENST00000364577 119 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 Y_RNA.459-201ENST00000384251 102 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 SNORA36C-201ENST00000384289 132 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RNU6-831P-201ENST00000384548 107 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RNU6-1105P-201ENST00000384774 107 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 MIR1-2-201ENST00000384961 85 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL592291.1-201ENST00000403830 352 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC009161.1-201ENST00000417306 376 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL356387.2-201ENST00000422272 243 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL358176.2-201ENST00000425769 204 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 ATP5JP1-201ENST00000431631 322 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RPL7P28-201ENST00000437739 740 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 ISCUP1-201ENST00000454451 448 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RPL21P104-201ENST00000464143 478 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC027575.1-201ENST00000481064 460 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC068587.1-201ENST00000483613 781 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 GMPSP1-201ENST00000514075 579 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC068831.4-201ENST00000556118 109 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC026464.5-201ENST00000562497 722 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 FRG2DP-202ENST00000566967 323 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC105224.1-201ENST00000587055 421 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 POLR3GP2-201ENST00000588366 668 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL080274.1-201ENST00000605565 220 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AL132822.1-201ENST00000617063 513 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC007792.1-201ENST00000623023 402 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 MIR6830-201ENST00000636015 70 ntBASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.32□□□□□ -1.72
CLIP3Q96DZ5 AC066616.2-201ENST00000559334 1481 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms