Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC099654.13-201ENST00000639774 207 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.09□□□□□ -1.92
PDLIM3Q53GG5 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
PDLIM3Q53GG5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 FAT1P1-201ENST00000406588 507 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC127391.1-201ENST00000411737 98 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 RPL30P2-201ENST00000414021 291 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 CDK8P2-201ENST00000415020 547 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 HSPE1P1-201ENST00000421494 318 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 TRIAP1P1-201ENST00000427062 225 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC090774.1-201ENST00000435925 246 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL031667.1-201ENST00000440222 725 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 MTND6P13-201ENST00000443510 523 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL592447.1-201ENST00000447592 540 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 SNRPFP4-201ENST00000456366 242 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 SNORD42A-201ENST00000459584 64 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 KLF3P2-201ENST00000465138 268 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 RPL23AP41-201ENST00000484754 458 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 LARP1BP2-201ENST00000486594 519 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC010587.1-201ENST00000505809 469 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 RNU6-201P-201ENST00000517100 61 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AP003467.2-201ENST00000520175 319 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AP003392.2-201ENST00000527269 208 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL121576.1-201ENST00000556055 276 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 MIR4528-201ENST00000577763 90 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC091167.4-201ENST00000605079 184 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AP000860.1-201ENST00000605250 559 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC245517.5-201ENST00000611529 162 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 HULC.1-201ENST00000612720 240 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC005344.1-201ENST00000613391 459 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL133173.2-201ENST00000614270 90 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 FP236240.3-201ENST00000623061 327 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AP004289.2-201ENST00000444413 1457 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 AC058791.1-201ENST00000608412 3198 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 TAB3P1-202ENST00000452645 1634 ntBASIC3.08□□□□□ -1.92
PDLIM3Q53GG5 DDX10P1-201ENST00000448545 1933 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNU5A-1-201ENST00000362698 116 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 U8.3-201ENST00000363321 132 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNU5A-8P-201ENST00000364102 114 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 SNORA23-201ENST00000365128 182 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 SNORD115.1-201ENST00000391109 76 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP107-201ENST00000411358 122 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 ELOCP17-201ENST00000414751 326 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 MRPL50P2-201ENST00000416821 482 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC002075.2-201ENST00000425207 252 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 USP9YP14-201ENST00000430663 563 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 ARPC3P1-201ENST00000437218 533 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RPL26P6-201ENST00000440913 438 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 ELOCP30-201ENST00000447108 299 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 HMGB3P8-201ENST00000449709 577 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC006480.1-201ENST00000449887 378 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 MTCO2P18-201ENST00000457151 658 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RN7SL807P-201ENST00000470923 297 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RAP1BP2-201ENST00000478270 544 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC106707.2-201ENST00000484182 374 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC026784.1-201ENST00000507986 352 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC104619.4-201ENST00000510773 249 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC022483.1-201ENST00000514020 567 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 Y_RNA.672-201ENST00000516289 104 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP164-201ENST00000516533 110 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNU6-1231P-201ENST00000517185 103 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP179-201ENST00000517284 121 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC093331.1-201ENST00000521474 169 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 DEFB108A-201ENST00000530110 222 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC123904.3-201ENST00000547218 814 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms