Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ARF4P2-201ENST00000430209 526 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 BX679664.1-201ENST00000434429 253 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC244505.5-201ENST00000443639 207 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AL671855.1-201ENST00000446875 1203 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 RPS4XP2-201ENST00000458402 793 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 SNRPGP3-201ENST00000469405 227 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC135721.1-201ENST00000497954 479 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 Y_RNA.655-201ENST00000515919 96 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 DEFB108D-201ENST00000527787 222 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 HIGD1AP1-201ENST00000550979 275 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC012213.3-201ENST00000577199 777 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC008498.1-201ENST00000613012 531 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC100793.4-201ENST00000613683 429 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 AP001506.1-201ENST00000615444 211 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 MIR6130-201ENST00000619419 109 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AC019226.1-201ENST00000625666 515 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP41Q3LFD5 AF127577.6-201ENST00000623352 2191 ntBASIC3.55□□□□□ -1.84
USP41Q3LFD5 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
USP41Q3LFD5 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP41Q3LFD5 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNU1-75P-201ENST00000347264 129 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNU5E-8P-201ENST00000363502 116 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNY4P16-201ENST00000364768 94 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNU6-805P-201ENST00000365643 106 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNU6-1119P-201ENST00000384349 108 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RNU2-71P-201ENST00000411395 189 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL663109.1-201ENST00000411498 844 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC007899.1-201ENST00000412776 775 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC063979.1-201ENST00000415539 377 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC024082.2-201ENST00000434771 238 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RPL35AP22-201ENST00000436855 335 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 PGBD4P3-201ENST00000440731 581 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 MTND6P13-201ENST00000443510 523 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RPL23AP31-201ENST00000456160 467 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 RPL23AP67-201ENST00000465341 474 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC109925.1-201ENST00000478069 331 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 VN1R104P-201ENST00000505115 1009 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC022483.1-201ENST00000514020 567 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 SNORA18.6-201ENST00000516792 115 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC004024.1-201ENST00000549244 247 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 ZNF192P1-203ENST00000565888 810 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC106782.4-201ENST00000568264 210 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 MIR3146-201ENST00000580367 79 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 MIR3118-1-201ENST00000581787 76 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.54□□□□□ -1.84
USP41Q3LFD5 AC135507.2-201ENST00000612443 309 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL138713.1-201ENST00000624026 2130 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 AL353743.1-202ENST00000431724 1695 ntBASIC3.54□□□□□ -1.84
USP41Q3LFD5 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP41Q3LFD5 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP41Q3LFD5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP41Q3LFD5 TAB3P1-202ENST00000452645 1634 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 Y_RNA.111-201ENST00000363248 100 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 RPS3AP36-201ENST00000398190 775 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RNU4-65P-201ENST00000410473 140 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 HMGB3P23-201ENST00000414981 585 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL589872.1-201ENST00000426602 288 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC090774.1-201ENST00000435925 246 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP41Q3LFD5 RPL23AP22-201ENST00000437556 453 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms