Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
SF3A1Q15459 RNY3P3-201ENST00000363816 102 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 RNU6-1283P-201ENST00000365314 105 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 RNU6-550P-201ENST00000391057 101 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AL606923.1-201ENST00000406616 190 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 RNU2-33P-201ENST00000410344 192 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 OR6C66P-201ENST00000414917 930 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 UBE2D3P2-201ENST00000424409 445 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 RPL7P46-201ENST00000425129 740 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AL592045.1-201ENST00000429867 352 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AF228730.2-201ENST00000438784 848 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AL118520.1-201ENST00000450770 291 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.86□□□□□ -1.63
SF3A1Q15459 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.86□□□□□ -1.63
SF3A1Q15459 RN7SL98P-201ENST00000462271 300 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC026979.1-201ENST00000492525 396 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC117522.3-201ENST00000507974 584 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 RNU6-143P-201ENST00000516942 93 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 SUMO2P20-201ENST00000520803 283 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.86□□□□□ -1.63
SF3A1Q15459 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.86□□□□□ -1.63
SF3A1Q15459 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.86□□□□□ -1.63
SF3A1Q15459 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.86□□□□□ -1.63
SF3A1Q15459 ZNF192P1-203ENST00000565888 810 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.86□□□□□ -1.63
SF3A1Q15459 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.86□□□□□ -1.63
SF3A1Q15459 MIR4715-201ENST00000584117 79 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.86□□□□□ -1.63
SF3A1Q15459 BNIP3P9-201ENST00000603714 553 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 DISC2.1-201ENST00000612827 205 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 MIR7702-201ENST00000621931 59 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AL354685.2-201ENST00000448218 1447 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC004520.1-201ENST00000608362 1413 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 TPTE2P4-201ENST00000258589 1605 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 AC103710.2-202ENST00000641454 2853 ntBASIC4.86□□□□□ -1.63
SF3A1Q15459 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.85□□□□□ -1.63
SF3A1Q15459 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SF3A1Q15459 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 Y_RNA.245-201ENST00000364493 95 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 RHOT1P2-201ENST00000366423 333 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SF3A1Q15459 RNU6-903P-201ENST00000391270 109 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 AL139397.2-201ENST00000404529 772 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL354719.1-201ENST00000406535 843 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL591034.1-201ENST00000407447 340 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 MIR1179-201ENST00000408703 91 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 RNU4-46P-201ENST00000410818 138 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 OR9R1P-201ENST00000412200 877 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 HSPD1P21-201ENST00000436541 245 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.85□□□□□ -1.63
SF3A1Q15459 RPL23AP81-201ENST00000455252 467 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 TRBV1-201ENST00000476502 284 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.85□□□□□ -1.63
SF3A1Q15459 RPS29P19-201ENST00000479709 171 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AC006517.1-201ENST00000480485 328 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 RPL39P36-201ENST00000490784 156 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 EIF4EP3-201ENST00000498782 656 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AC098591.2-201ENST00000510152 315 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 AP005435.4-201ENST00000529514 284 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.85□□□□□ -1.63
SF3A1Q15459 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SF3A1Q15459 AC025946.2-201ENST00000603398 234 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL138889.2-201ENST00000603883 242 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AL020991.1-201ENST00000612314 373 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.85□□□□□ -1.63
SF3A1Q15459 AL512643.1-201ENST00000635735 524 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.85□□□□□ -1.63
SF3A1Q15459 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.85□□□□□ -1.63
SF3A1Q15459 RIOK3P1-201ENST00000418778 1528 ntBASIC4.85□□□□□ -1.63
SF3A1Q15459 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.85□□□□□ -1.63
SF3A1Q15459 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SF3A1Q15459 AC016588.2-201ENST00000632484 3021 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.84□□□□□ -1.63
SF3A1Q15459 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.84□□□□□ -1.63
SF3A1Q15459 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SF3A1Q15459 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SF3A1Q15459 ASNSP3-201ENST00000451989 1306 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 RNU6-451P-201ENST00000362921 107 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SF3A1Q15459 MIR93-201ENST00000385024 80 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SF3A1Q15459 AL136116.1-201ENST00000403591 381 ntBASIC4.84□□□□□ -1.63
SF3A1Q15459 RNA5SP36-201ENST00000410197 133 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms