Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC007256.1-201ENST00000392253 2765 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC009812.4-201ENST00000569134 1805 ntBASIC3.02□□□□□ -1.93
SOX3P41225 TEX21P-201ENST00000447107 1476 ntBASIC3.02□□□□□ -1.93
SOX3P41225 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX3P41225 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AC138915.3-201ENST00000562908 1389 ntBASIC3.01□□□□□ -1.93
SOX3P41225 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 RNU5E-8P-201ENST00000363502 116 ntBASIC3.01□□□□□ -1.93
SOX3P41225 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 Y_RNA.436-201ENST00000384097 102 ntBASIC3.01□□□□□ -1.93
SOX3P41225 SNORA75-201ENST00000384158 137 ntBASIC3.01□□□□□ -1.93
SOX3P41225 SNORA40.3-201ENST00000390964 122 ntBASIC3.01□□□□□ -1.93
SOX3P41225 FCF1P10-201ENST00000407590 479 ntBASIC3.01□□□□□ -1.93
SOX3P41225 RPS3AP24-201ENST00000407896 734 ntBASIC3.01□□□□□ -1.93
SOX3P41225 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AC006366.1-201ENST00000422002 759 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.01□□□□□ -1.93
SOX3P41225 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.01□□□□□ -1.93
SOX3P41225 AP002884.2-201ENST00000471647 395 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AC135721.1-201ENST00000497954 479 ntBASIC3.01□□□□□ -1.93
SOX3P41225 ARL2BPP4-201ENST00000506854 471 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AC079140.3-201ENST00000511111 550 ntBASIC3.01□□□□□ -1.93
SOX3P41225 RNU6-798P-201ENST00000516912 103 ntBASIC3.01□□□□□ -1.93
SOX3P41225 HMGN1P28-201ENST00000521340 364 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.01□□□□□ -1.93
SOX3P41225 DEFB108D-201ENST00000527787 222 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AC125611.2-201ENST00000551907 647 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 RPL21P5-201ENST00000554662 472 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AL157394.1-201ENST00000562983 1224 ntBASIC3.01□□□□□ -1.93
SOX3P41225 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 COX6CP3-201ENST00000580869 223 ntBASIC3.01□□□□□ -1.93
SOX3P41225 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AC004908.2-201ENST00000609090 574 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AL391813.2-201ENST00000609113 322 ntBASIC3.01□□□□□ -1.93
SOX3P41225 uc_338.1-201ENST00000612113 180 ntBASIC3.01□□□□□ -1.93
SOX3P41225 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.01□□□□□ -1.93
SOX3P41225 AL157817.1-201ENST00000614264 790 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AL159972.1-201ENST00000625150 448 ntBASIC3.01□□□□□ -1.93
SOX3P41225 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 AC019226.1-201ENST00000625666 515 ntBASIC3.01□□□□□ -1.93
SOX3P41225 AC010149.2-201ENST00000637608 315 ntBASIC3.01□□□□□ -1.93
SOX3P41225 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SOX3P41225 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX3P41225 BCLAF1P1-201ENST00000505813 2752 ntBASIC3□□□□□ -1.93
SOX3P41225 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3□□□□□ -1.93
SOX3P41225 AC092326.2-201ENST00000624772 1561 ntBASIC3□□□□□ -1.93
SOX3P41225 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3□□□□□ -1.93
SOX3P41225 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
SOX3P41225 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SOX3P41225 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
SOX3P41225 RNU6-223P-201ENST00000362830 107 ntBASIC3□□□□□ -1.93
SOX3P41225 RNU6-173P-201ENST00000364215 104 ntBASIC3□□□□□ -1.93
SOX3P41225 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
SOX3P41225 RNU6-297P-201ENST00000384636 107 ntBASIC3□□□□□ -1.93
SOX3P41225 HSPE1P26-201ENST00000405341 275 ntBASIC3□□□□□ -1.93
SOX3P41225 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3□□□□□ -1.93
SOX3P41225 RNU2-71P-201ENST00000411395 189 ntBASIC3□□□□□ -1.93
SOX3P41225 RPS3AP3-201ENST00000411933 242 ntBASIC3□□□□□ -1.93
SOX3P41225 CDK8P2-201ENST00000415020 547 ntBASIC3□□□□□ -1.93
SOX3P41225 PPP1R11P2-201ENST00000423543 382 ntBASIC3□□□□□ -1.93
SOX3P41225 MTATP6P4-201ENST00000427725 675 ntBASIC3□□□□□ -1.93
SOX3P41225 NEK4P1-201ENST00000433383 879 ntBASIC3□□□□□ -1.93
SOX3P41225 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 MTND6P13-201ENST00000443510 523 ntBASIC3□□□□□ -1.93
SOX3P41225 AC115115.1-201ENST00000449927 248 ntBASIC3□□□□□ -1.93
SOX3P41225 snoU109.1-201ENST00000459339 135 ntBASIC3□□□□□ -1.93
SOX3P41225 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3□□□□□ -1.93
SOX3P41225 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 RN7SL504P-201ENST00000494496 287 ntBASIC3□□□□□ -1.93
SOX3P41225 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3□□□□□ -1.93
SOX3P41225 MTND3P5-201ENST00000512798 333 ntBASIC3□□□□□ -1.93
SOX3P41225 AC026801.2-201ENST00000515352 425 ntBASIC3□□□□□ -1.93
SOX3P41225 RN7SKP57-201ENST00000517248 293 ntBASIC3□□□□□ -1.93
SOX3P41225 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3□□□□□ -1.93
SOX3P41225 AP000857.1-201ENST00000532151 543 ntBASIC3□□□□□ -1.93
SOX3P41225 AL133153.1-201ENST00000557756 303 ntBASIC3□□□□□ -1.93
SOX3P41225 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3□□□□□ -1.93
SOX3P41225 MIR3118-1-201ENST00000581787 76 ntBASIC3□□□□□ -1.93
SOX3P41225 AC103987.3-201ENST00000582071 292 ntBASIC3□□□□□ -1.93
SOX3P41225 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3□□□□□ -1.93
SOX3P41225 YPEL5P2-201ENST00000605553 359 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms