Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC9P31274 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 Y_RNA.548-201ENST00000384656 105 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 RNY3P10-201ENST00000384764 102 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 RPL17P12-201ENST00000413391 526 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 BTF3L4P1-201ENST00000413813 468 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC244098.2-201ENST00000422068 99 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 THAP5P1-201ENST00000439089 262 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXC9P31274 FAM103A2P-201ENST00000444122 354 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 Z82190.1-201ENST00000454534 490 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 MTND4LP3-201ENST00000468320 276 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC090525.1-201ENST00000479116 478 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC9P31274 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC017037.2-201ENST00000513850 890 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 RN7SKP43-201ENST00000516173 320 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXC9P31274 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC9P31274 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC007115.1-201ENST00000546853 234 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AL512310.1-201ENST00000548639 172 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC091544.4-201ENST00000555268 342 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC9P31274 AL157394.1-201ENST00000562983 1224 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC010928.3-201ENST00000587712 541 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC119751.7-201ENST00000600494 245 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC073544.2-201ENST00000601155 540 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC007687.1-201ENST00000602704 304 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC025946.2-201ENST00000603398 234 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AL031176.1-201ENST00000604554 466 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 RN7SKP299-201ENST00000606679 301 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC064807.4-201ENST00000607201 407 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC006111.3-201ENST00000622137 383 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC025048.6-202ENST00000627667 438 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 AC010149.2-201ENST00000637608 315 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC9P31274 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
HOXC9P31274 AC244517.1-201ENST00000606030 2086 ntBASIC3.67□□□□□ -1.82
HOXC9P31274 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC9P31274 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC9P31274 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 RNA5SP68-201ENST00000363885 119 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 RNA5SP189-201ENST00000364920 115 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 SNORA67.4-201ENST00000384688 142 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HOXC9P31274 HMGB3P23-201ENST00000414981 585 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 RPL31P12-201ENST00000422587 358 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC9P31274 EZH2P1-201ENST00000431167 291 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AC010153.1-201ENST00000432862 727 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AL513043.1-201ENST00000439124 535 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC9P31274 AC092451.1-201ENST00000480211 153 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 AC093278.1-201ENST00000494700 600 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXC9P31274 AC010424.1-201ENST00000506336 297 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC9P31274 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 AP004371.1-201ENST00000525240 214 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC9P31274 CR383656.7-201ENST00000548164 174 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 SETP7-201ENST00000552169 453 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC9P31274 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC9P31274 RSL24D1P11-201ENST00000591045 491 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 TPMTP1-201ENST00000592307 737 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 SNRPGP15-201ENST00000600149 222 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 AC068276.1-201ENST00000605793 379 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 AL157700.1-201ENST00000561973 1432 ntBASIC3.66□□□□□ -1.82
HOXC9P31274 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC9P31274 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HOXC9P31274 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXC9P31274 AC092125.1-201ENST00000562568 1995 ntBASIC3.65□□□□□ -1.82
HOXC9P31274 MTND4P4-201ENST00000439033 1366 ntBASIC3.65□□□□□ -1.82
HOXC9P31274 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HOXC9P31274 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXC9P31274 Y_RNA.318-201ENST00000365131 97 ntBASIC3.65□□□□□ -1.83
HOXC9P31274 RNU5E-5P-201ENST00000365379 116 ntBASIC3.65□□□□□ -1.83
HOXC9P31274 RNU6-629P-201ENST00000384061 103 ntBASIC3.65□□□□□ -1.83
HOXC9P31274 RNU6-533P-201ENST00000384144 107 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms