Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXC11O43248 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXC11O43248 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXC11O43248 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
HOXC11O43248 Y_RNA.201-201ENST00000364052 96 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 RAC1P6-201ENST00000423911 575 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXC11O43248 AL512844.2-201ENST00000433990 593 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 AL360221.1-201ENST00000445989 335 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 RN7SL601P-201ENST00000471221 293 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 RPS20P22-201ENST00000473700 357 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 RBM43P1-201ENST00000476891 1081 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 HSPD1P15-201ENST00000505573 1122 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXC11O43248 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXC11O43248 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXC11O43248 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 AC040904.1-201ENST00000590850 223 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXC11O43248 AC079089.3-201ENST00000603094 673 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.6-201ENST00000603753 252 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.11-201ENST00000604059 253 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AC008162.1-201ENST00000604718 254 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.1-201ENST00000604752 252 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.5-201ENST00000605253 252 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.12-201ENST00000605291 253 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.8-201ENST00000605353 252 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL670379.7-201ENST00000605823 252 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 RN7SKP299-201ENST00000606679 301 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXC11O43248 OR5H6-203ENST00000642105 978 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXC11O43248 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 TEX21P-201ENST00000447107 1476 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 AL353746.1-201ENST00000566293 6881 ntBASIC3.65□□□□□ -1.83
HOXC11O43248 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXC11O43248 FARSBP1-201ENST00000435808 1778 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXC11O43248 Y_RNA.553-201ENST00000384670 102 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 MIR325-201ENST00000385260 98 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 RPL23AP32-201ENST00000395315 459 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 RNU6-1077P-201ENST00000410506 102 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC127391.1-201ENST00000411737 98 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 ELOCP4-201ENST00000420090 333 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 USP9YP36-201ENST00000424581 829 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 HMGB1P27-201ENST00000431429 603 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC005019.1-201ENST00000436455 431 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXC11O43248 RPL23AP14-201ENST00000468281 468 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXC11O43248 MTND4P2-201ENST00000507767 1203 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC006445.2-201ENST00000510061 472 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 RNA5SP337-201ENST00000517007 109 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 RNU6-711P-201ENST00000517255 106 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 NCAPGP2-201ENST00000557911 754 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC034105.3-201ENST00000565294 442 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC11O43248 MIR3609-201ENST00000582661 80 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 MIR5195-201ENST00000583555 115 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 BRDTP1-201ENST00000605735 677 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 AL133173.2-201ENST00000614270 90 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC009090.3-201ENST00000616553 565 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 SNORA50A-202ENST00000629536 136 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXC11O43248 AC090582.1-201ENST00000636321 199 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 AL732372.2-225ENST00000642124 456 ntBASIC3.64□□□□□ -1.83
HOXC11O43248 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXC11O43248 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXC11O43248 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 RNU5E-1-201ENST00000362477 120 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 RNU4-35P-201ENST00000362588 141 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 MIR491-201ENST00000384877 84 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 SNORD17-201ENST00000390930 237 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 RNU1-101P-201ENST00000391171 127 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 NDUFS5P1-201ENST00000405668 289 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC11O43248 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC091390.3-201ENST00000426478 338 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms