Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 SDAD1P2-201ENST00000441308 2028 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 DEFB108F-201ENST00000344638 222 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RNU6-76P-201ENST00000384060 104 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RPS20P2-201ENST00000402520 389 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RNU4-65P-201ENST00000410473 140 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RNU6-516P-201ENST00000411381 104 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC078974.1-201ENST00000411597 223 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC007899.1-201ENST00000412776 775 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RPS7P13-201ENST00000413955 498 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 COTL1P1-201ENST00000422309 375 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RPL27AP8-201ENST00000424277 446 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 ATP5C1P1-201ENST00000441945 895 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC011825.1-201ENST00000484967 388 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC117522.2-201ENST00000510049 657 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC116347.2-201ENST00000514912 523 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 MTND4LP18-201ENST00000526864 291 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 DEFB108D-201ENST00000527787 222 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 OR4T1P-201ENST00000554933 911 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 BDH2P1-201ENST00000602288 736 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC068790.3-201ENST00000602988 553 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC068276.1-201ENST00000605793 379 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC004908.2-201ENST00000609090 574 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 OR10AB1P-201ENST00000609613 938 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AL158063.1-201ENST00000615349 536 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AL603758.1-201ENST00000618654 241 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC009878.1-201ENST00000621819 340 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC006386.2-201ENST00000624491 75 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC012005.1-201ENST00000624575 75 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 AL513185.3-201ENST00000433335 1300 ntBASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC3Q9BQI4 DDX10P1-201ENST00000448545 1933 ntBASIC3.15□□□□□ -1.9
CCDC3Q9BQI4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CCDC3Q9BQI4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.15□□□□□ -1.9
CCDC3Q9BQI4 RNA5SP295-201ENST00000362655 121 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 RNU5E-8P-201ENST00000363502 116 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 DEFB109C-201ENST00000382575 264 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 DEFB109B-201ENST00000382656 264 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 RNU6-533P-201ENST00000384144 107 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 MIR19A-201ENST00000384878 82 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL138885.1-201ENST00000405921 675 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 RPS3AP24-201ENST00000407896 734 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 SSXP9-201ENST00000417503 292 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 KATNBL1P3-201ENST00000443475 909 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 RAC1P7-201ENST00000445367 377 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 NANOGNBP1-201ENST00000448444 480 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL122001.1-201ENST00000457027 370 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 VN1R104P-201ENST00000505115 1009 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 PCBP2P3-201ENST00000509726 843 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC026801.2-201ENST00000515352 425 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 SNORA31.22-201ENST00000517204 135 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 MED28P6-201ENST00000558776 231 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC012414.6-201ENST00000568241 401 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 MIR3921-201ENST00000577308 85 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms