Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.33□□□□□ -1.72
NUP88Q99567 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 RPS27AP1-201ENST00000475545 471 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 AC105914.1-201ENST00000511798 226 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 RNU6-718P-201ENST00000516166 105 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.33□□□□□ -1.72
NUP88Q99567 AP001893.2-201ENST00000526949 202 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 OR4R1P-201ENST00000529879 463 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
NUP88Q99567 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 TPRKBP2-201ENST00000565969 475 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.33□□□□□ -1.72
NUP88Q99567 AL137849.1-201ENST00000604767 169 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AL355810.1-201ENST00000614629 552 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 SDR42E1P2-201ENST00000614861 481 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC010133.1-201ENST00000615809 842 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AL357559.1-201ENST00000622228 274 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC110801.1-201ENST00000623590 212 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC006504.1-201ENST00000562493 3666 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.33□□□□□ -1.72
NUP88Q99567 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.33□□□□□ -1.72
NUP88Q99567 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.33□□□□□ -1.72
NUP88Q99567 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.33□□□□□ -1.72
NUP88Q99567 AL133412.1-201ENST00000380194 2992 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 AC007823.1-201ENST00000569932 1566 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 ELF2P3-201ENST00000445099 1506 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 HSPE1P11-201ENST00000339579 310 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 RNU6-511P-201ENST00000363496 107 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 RNU6-1284P-201ENST00000363701 100 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 Y_RNA.333-201ENST00000365274 102 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 MIR7-3-201ENST00000384898 110 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 VDAC1P3-201ENST00000434069 851 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AL138799.3-201ENST00000438968 350 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AC022364.2-201ENST00000457963 554 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 SNORD97-201ENST00000459187 142 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AL049874.1-201ENST00000489560 388 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.32□□□□□ -1.72
NUP88Q99567 AF213884.2-201ENST00000510417 903 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.32□□□□□ -1.72
NUP88Q99567 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AC090572.1-201ENST00000519251 160 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 OR5D17P-201ENST00000531492 978 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.32□□□□□ -1.72
NUP88Q99567 AP001094.1-201ENST00000579805 193 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC105224.1-201ENST00000587055 421 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 AL359880.1-201ENST00000621879 266 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC139792.3-201ENST00000623525 224 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC009161.2-201ENST00000624626 138 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.32□□□□□ -1.72
NUP88Q99567 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 CR848007.1-201ENST00000442354 1699 ntBASIC4.32□□□□□ -1.72
NUP88Q99567 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NUP88Q99567 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.32□□□□□ -1.72
NUP88Q99567 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.31□□□□□ -1.72
NUP88Q99567 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
NUP88Q99567 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.31□□□□□ -1.72
NUP88Q99567 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NUP88Q99567 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NUP88Q99567 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NUP88Q99567 SNORA31-201ENST00000362607 130 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RNA5SP502-201ENST00000362694 119 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RNU6-1097P-201ENST00000363586 107 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RNU6-1103P-201ENST00000384150 107 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 Y_RNA.554-201ENST00000384672 102 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NUP88Q99567 HMGN2P8-201ENST00000391458 268 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RNU2-9P-201ENST00000410194 145 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 ATP5A1P2-201ENST00000412323 255 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.31□□□□□ -1.72
NUP88Q99567 RAC1P6-201ENST00000423911 575 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.31□□□□□ -1.72
NUP88Q99567 BNIP3P2-201ENST00000441221 577 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RPS3AP46-201ENST00000448352 682 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 AC092451.1-201ENST00000480211 153 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 RPL31P13-201ENST00000484151 370 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.31□□□□□ -1.72
NUP88Q99567 RN7SKP18-201ENST00000516005 275 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 MIR2114-201ENST00000516645 80 ntBASIC4.31□□□□□ -1.72
NUP88Q99567 SNORA31.22-201ENST00000517204 135 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms