Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SEPT7P9-203ENST00000604116 343 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AC123912.5-201ENST00000605470 343 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AL590099.1-201ENST00000615276 138 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AL359851.1-201ENST00000569460 4997 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AC018630.2-201ENST00000534866 2403 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
COL7A1Q02388 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC0.91□□□□□ -2.26
COL7A1Q02388 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
COL7A1Q02388 HSPE1P26-201ENST00000405341 275 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 MTND2P16-201ENST00000419987 799 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 PTP4A1P1-201ENST00000420539 515 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC0.91□□□□□ -2.26
COL7A1Q02388 AP000676.4-201ENST00000624659 623 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC0.9□□□□□ -2.26
COL7A1Q02388 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
COL7A1Q02388 AC008850.1-201ENST00000427546 362 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 SNRPGP13-201ENST00000442212 177 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC0.9□□□□□ -2.26
COL7A1Q02388 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC0.9□□□□□ -2.26
COL7A1Q02388 SNORD116-26-201ENST00000516006 96 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 SMILR-201ENST00000533992 553 ntTSL 4 BASIC0.9□□□□□ -2.26
COL7A1Q02388 AC007115.1-201ENST00000546853 234 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 AC091057.2-201ENST00000602594 792 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 AC097504.2-201ENST00000608088 454 ntBASIC0.9□□□□□ -2.26
COL7A1Q02388 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC0.9□□□□□ -2.26
COL7A1Q02388 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
COL7A1Q02388 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
COL7A1Q02388 CUL4AP1-201ENST00000514750 1863 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 RNU6-105P-201ENST00000363909 104 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 RNU4-52P-201ENST00000384209 138 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 MIR758-201ENST00000390227 88 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 SNORA40.6-201ENST00000391153 128 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 RNU1-78P-201ENST00000391248 165 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.9□□□□□ -2.27
COL7A1Q02388 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC0.9□□□□□ -2.27
COL7A1Q02388 AC011468.4-201ENST00000603942 409 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 CENPCP1-201ENST00000533085 2578 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 PABPC1P7-201ENST00000413177 1513 ntBASIC0.9□□□□□ -2.27
COL7A1Q02388 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC0.9□□□□□ -2.27
COL7A1Q02388 Y_RNA.518-201ENST00000384552 113 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC016769.3-201ENST00000396562 315 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC0.89□□□□□ -2.27
COL7A1Q02388 NEFMP1-201ENST00000443423 1006 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC243772.1-201ENST00000451620 410 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 RPL23AP41-201ENST00000484754 458 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 RNA5SP330-201ENST00000517096 96 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC090821.2-201ENST00000523552 176 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC0.89□□□□□ -2.27
COL7A1Q02388 AL020996.3-201ENST00000606617 222 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
COL7A1Q02388 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC0.89□□□□□ -2.27
COL7A1Q02388 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC0.89□□□□□ -2.27
COL7A1Q02388 AC111188.2-201ENST00000529697 1387 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.89□□□□□ -2.27
COL7A1Q02388 RNA5SP489-201ENST00000410986 109 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 SSXP9-201ENST00000417503 292 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC0.89□□□□□ -2.27
COL7A1Q02388 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC0.89□□□□□ -2.27
COL7A1Q02388 AL354685.2-201ENST00000448218 1447 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC108059.3-201ENST00000456388 214 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC0.89□□□□□ -2.27
COL7A1Q02388 OR5AQ1P-201ENST00000527596 927 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AP005435.4-201ENST00000529514 284 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC0.89□□□□□ -2.27
COL7A1Q02388 EEF1B2P4-201ENST00000551398 348 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AL590095.2-201ENST00000604136 117 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AL159169.2-201ENST00000610061 1269 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 AC116447.1-201ENST00000613153 453 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
COL7A1Q02388 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC0.89□□□□□ -2.27
COL7A1Q02388 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
COL7A1Q02388 AC090740.1-201ENST00000623193 2262 ntBASIC0.89□□□□□ -2.27
COL7A1Q02388 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC0.89□□□□□ -2.27
COL7A1Q02388 SNORD114-23-201ENST00000363536 72 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 ANAPC10P1-201ENST00000395991 556 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.88□□□□□ -2.27
COL7A1Q02388 VN1R107P-201ENST00000601784 209 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC0.88□□□□□ -2.27
COL7A1Q02388 AC018630.2-202ENST00000422992 927 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.88□□□□□ -2.27
COL7A1Q02388 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC0.88□□□□□ -2.27
COL7A1Q02388 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC0.88□□□□□ -2.27
COL7A1Q02388 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC0.88□□□□□ -2.27
COL7A1Q02388 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC0.88□□□□□ -2.27
COL7A1Q02388 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 AC010928.2-201ENST00000588017 287 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 AC000123.2-201ENST00000623124 461 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 MIR4278-201ENST00000636094 69 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL7A1Q02388 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
COL7A1Q02388 SNRPEP3-201ENST00000338402 276 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 HSPE1P11-201ENST00000339579 310 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 RNU1-148P-201ENST00000384472 162 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 PSMA2P3-201ENST00000429685 675 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms