Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
HOXA4Q00056 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 RNU4-44P-201ENST00000363050 141 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 Y_RNA.132-201ENST00000363421 102 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 SNORA63-201ENST00000363450 132 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RNA5SP175-201ENST00000364275 119 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 Y_RNA.326-201ENST00000365176 113 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 SNORD3H-201ENST00000384486 214 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL592114.1-201ENST00000403842 483 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 HDGFP1-201ENST00000405943 252 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 SNORA11F-201ENST00000408237 128 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RNU4-46P-201ENST00000410818 138 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RNU4-14P-201ENST00000410858 122 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RNU6-387P-201ENST00000411331 105 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RPL7AP73-201ENST00000413490 353 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 USP9YP20-201ENST00000419224 558 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXA4Q00056 RPS3AP52-201ENST00000435639 297 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL359073.1-201ENST00000448036 403 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 RPL7L1P1-201ENST00000448259 785 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 AC106872.2-201ENST00000494303 480 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC008958.1-201ENST00000511047 682 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 Y_RNA.682-201ENST00000516457 100 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 Y_RNA.689-201ENST00000516589 107 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 SNORA31.22-201ENST00000517204 135 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC090136.1-201ENST00000520009 240 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC090151.1-201ENST00000520784 730 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 RANP3-201ENST00000530970 276 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AP003072.1-201ENST00000531740 145 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXA4Q00056 AP000763.2-201ENST00000540641 163 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA4Q00056 OR11H5P-201ENST00000554039 926 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL442663.2-201ENST00000554385 511 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL121821.2-201ENST00000556081 394 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 OR4H12P-201ENST00000556269 907 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 FRG2DP-202ENST00000566967 323 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 HNRNPCP4-201ENST00000571636 900 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 MIR3939-201ENST00000582614 106 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL670379.10-201ENST00000604330 253 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL670379.9-201ENST00000605428 253 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC007619.2-201ENST00000605743 379 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AL022345.1-201ENST00000607292 135 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA4Q00056 AL353748.2-201ENST00000622148 471 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 AC007998.5-201ENST00000622938 237 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA4Q00056 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA4Q00056 AC121333.1-201ENST00000567488 2709 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA4Q00056 AP001350.1-201ENST00000601906 1524 ntBASIC3.6□□□□□ -1.83
HOXA4Q00056 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA4Q00056 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
HOXA4Q00056 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HOXA4Q00056 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA4Q00056 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 Y_RNA.259-201ENST00000364619 101 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 Y_RNA.339-201ENST00000365325 102 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RNA5SP22-201ENST00000365393 109 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC068538.1-201ENST00000376856 336 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RNU6-1127P-201ENST00000384580 107 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RNU6-14P-201ENST00000384630 106 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RNU6-882P-201ENST00000391025 103 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL590004.1-201ENST00000405321 300 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 POLHP1-201ENST00000411806 470 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RPL23AP26-201ENST00000412728 464 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC092809.3-201ENST00000415453 231 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RPL21P112-201ENST00000434403 463 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA4Q00056 NEFMP1-201ENST00000443423 1006 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 RPS15AP27-201ENST00000449183 343 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 SNORD19B-201ENST00000459623 84 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RN7SL303P-201ENST00000469773 251 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC022795.1-201ENST00000473808 480 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 RPL23AP65-201ENST00000475608 468 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms