Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC073308.1-201ENST00000623696 305 ntBASIC3.28□□□□□ -1.88
HNF4AP41235 AC098679.4-201ENST00000624241 654 ntBASIC3.28□□□□□ -1.88
HNF4AP41235 AC006927.3-201ENST00000638789 384 ntBASIC3.28□□□□□ -1.88
HNF4AP41235 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HNF4AP41235 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HNF4AP41235 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
HNF4AP41235 API5P2-201ENST00000397055 1498 ntBASIC3.28□□□□□ -1.88
HNF4AP41235 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.27□□□□□ -1.89
HNF4AP41235 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.27□□□□□ -1.89
HNF4AP41235 AC093010.3-201ENST00000570269 15214 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HNF4AP41235 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 RNU6-623P-201ENST00000363143 105 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RNA5SP50-201ENST00000363731 107 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RNU4-75P-201ENST00000364621 146 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.27□□□□□ -1.89
HNF4AP41235 Y_RNA.553-201ENST00000384670 102 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AL356421.1-201ENST00000403255 413 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
HNF4AP41235 RNA5SP107-201ENST00000411358 122 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 AL356968.1-201ENST00000416622 474 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AL645937.1-202ENST00000421799 937 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 CYCSP46-201ENST00000423569 204 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.27□□□□□ -1.89
HNF4AP41235 MED14P1-201ENST00000430517 648 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.27□□□□□ -1.89
HNF4AP41235 MTCO1P19-201ENST00000443487 500 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RAC1P5-201ENST00000512182 576 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 TTC39CP1-201ENST00000512513 755 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 RNU6-1282P-201ENST00000516735 96 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RNU6-840P-201ENST00000517275 65 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.27□□□□□ -1.89
HNF4AP41235 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 AC092354.1-201ENST00000606057 376 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC239868.4-201ENST00000608318 671 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC019176.2-201ENST00000611579 315 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC122108.2-201ENST00000611946 526 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 HULC.1-201ENST00000612720 240 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.27□□□□□ -1.89
HNF4AP41235 AC009268.2-201ENST00000621925 457 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 AC090582.1-201ENST00000636321 199 ntBASIC3.27□□□□□ -1.89
HNF4AP41235 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HNF4AP41235 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HNF4AP41235 AL356274.2-201ENST00000624379 3752 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 MTCO1P12-201ENST00000414273 1543 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 CR383658.2-201ENST00000547576 1525 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HNF4AP41235 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HNF4AP41235 RNU6-462P-201ENST00000362659 105 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 RNU6-1035P-201ENST00000384477 107 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 MIR23B-201ENST00000384832 97 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 RNA5SP31-201ENST00000411144 127 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.26□□□□□ -1.89
HNF4AP41235 AC006366.1-201ENST00000422002 759 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 UBE2FP3-201ENST00000436366 524 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.26□□□□□ -1.89
HNF4AP41235 VN1R34P-201ENST00000447387 883 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 PDSS1P2-201ENST00000449397 678 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 snoU13.28-201ENST00000459235 104 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 RPL21P10-201ENST00000463521 490 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 RPS26P21-201ENST00000475397 348 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 RN7SL293P-201ENST00000481765 281 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.26□□□□□ -1.89
HNF4AP41235 AC006499.5-201ENST00000505037 514 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 MTND4P2-201ENST00000507767 1203 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 MTCO3P7-201ENST00000510008 774 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 MTND3P5-201ENST00000512798 333 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC022447.1-201ENST00000515358 464 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 IGKV2-26-201ENST00000518305 343 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.26□□□□□ -1.89
HNF4AP41235 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.26□□□□□ -1.89
HNF4AP41235 AC006362.1-201ENST00000567392 174 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.26□□□□□ -1.89
HNF4AP41235 RPL23AP78-201ENST00000599928 470 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL162713.1-201ENST00000604480 262 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 RNU6-88P-201ENST00000606801 100 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL603758.1-201ENST00000618654 241 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 SNORD39.4-201ENST00000620099 78 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC090617.7-201ENST00000623952 126 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC068880.5-201ENST00000624331 290 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.26□□□□□ -1.89
HNF4AP41235 MTND5P27-201ENST00000428871 1720 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AL049641.1-201ENST00000441055 1948 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 AC092447.10-201ENST00000620607 1652 ntBASIC3.26□□□□□ -1.89
HNF4AP41235 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms