Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX1P28360 RPS27P18-201ENST00000431701 247 ntBASIC5.12□□□□□ -1.59
MSX1P28360 HSPD1P21-201ENST00000436541 245 ntBASIC5.12□□□□□ -1.59
MSX1P28360 HIGD1AP2-201ENST00000446367 280 ntBASIC5.12□□□□□ -1.59
MSX1P28360 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX1P28360 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX1P28360 RNU6-143P-201ENST00000516942 93 ntBASIC5.12□□□□□ -1.59
MSX1P28360 MTND5P41-201ENST00000517498 206 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AC109479.2-201ENST00000517842 174 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX1P28360 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX1P28360 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX1P28360 AC023824.2-201ENST00000566185 400 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX1P28360 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
MSX1P28360 AL590240.4-201ENST00000616908 390 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX1P28360 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 AC133552.1-201ENST00000569988 4007 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSX1P28360 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX1P28360 AL022311.1-201ENST00000623726 19416 ntBASIC5.11□□□□□ -1.59
MSX1P28360 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
MSX1P28360 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX1P28360 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
MSX1P28360 UBE2L2-201ENST00000254302 429 ntBASIC5.11□□□□□ -1.59
MSX1P28360 Y_RNA.292-201ENST00000364904 97 ntBASIC5.11□□□□□ -1.59
MSX1P28360 RNU6-395P-201ENST00000365662 106 ntBASIC5.11□□□□□ -1.59
MSX1P28360 RFX3-203ENST00000381984 364 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX1P28360 SNORD78.2-201ENST00000391076 69 ntBASIC5.11□□□□□ -1.59
MSX1P28360 SNORA53-201ENST00000391141 249 ntBASIC5.11□□□□□ -1.59
MSX1P28360 RNA5SP296-201ENST00000410523 111 ntBASIC5.11□□□□□ -1.59
MSX1P28360 RPL19P1-201ENST00000411635 428 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX1P28360 HSPE1P25-201ENST00000455484 251 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AC108161.1-201ENST00000461060 402 ntBASIC5.11□□□□□ -1.59
MSX1P28360 RN7SL188P-201ENST00000469842 285 ntBASIC5.11□□□□□ -1.59
MSX1P28360 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX1P28360 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.11□□□□□ -1.59
MSX1P28360 AC022133.1-201ENST00000490961 571 ntBASIC5.11□□□□□ -1.59
MSX1P28360 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX1P28360 RNU6-927P-201ENST00000516199 100 ntBASIC5.11□□□□□ -1.59
MSX1P28360 Y_RNA.706-201ENST00000516933 99 ntBASIC5.11□□□□□ -1.59
MSX1P28360 IGLV3-24-201ENST00000517477 197 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AC122688.1-201ENST00000541494 223 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AL157871.3-201ENST00000557231 293 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX1P28360 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX1P28360 MIR3144-201ENST00000579460 79 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.11□□□□□ -1.59
MSX1P28360 AC118658.2-201ENST00000618697 459 ntBASIC5.11□□□□□ -1.59
MSX1P28360 AC000095.2-202ENST00000637415 154 ntBASIC5.11□□□□□ -1.59
MSX1P28360 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX1P28360 SRRM1P3-201ENST00000426911 2678 ntBASIC5.11□□□□□ -1.59
MSX1P28360 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX1P28360 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
MSX1P28360 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX1P28360 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
MSX1P28360 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX1P28360 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
MSX1P28360 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 AC092681.1-201ENST00000297369 291 ntBASIC5.1□□□□□ -1.59
MSX1P28360 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
MSX1P28360 U3.6-201ENST00000363622 211 ntBASIC5.1□□□□□ -1.59
MSX1P28360 Y_RNA.240-201ENST00000364469 95 ntBASIC5.1□□□□□ -1.59
MSX1P28360 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 SNORD63-201ENST00000384262 68 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RNU6-804P-201ENST00000384286 107 ntBASIC5.1□□□□□ -1.59
MSX1P28360 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 RNU6-712P-201ENST00000410558 100 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RNU2-51P-201ENST00000410708 197 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX1P28360 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 LINC02210-201ENST00000444561 288 ntBASIC5.1□□□□□ -1.59
MSX1P28360 U8.22-201ENST00000459141 133 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RN7SL727P-201ENST00000482164 296 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RN7SL547P-201ENST00000490793 290 ntBASIC5.1□□□□□ -1.59
MSX1P28360 ANXA2P1-201ENST00000505539 926 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AL671862.1-201ENST00000515851 349 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RNU7-175P-201ENST00000515915 61 ntBASIC5.1□□□□□ -1.59
MSX1P28360 SNORD116-28-201ENST00000516123 91 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms