Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TMF1P1-201ENST00000576058 373 ntBASIC2□□□□□ -2.09
COL5A3P25940 AC006023.2-201ENST00000609916 167 ntBASIC2□□□□□ -2.09
COL5A3P25940 AL109620.1-201ENST00000618738 1197 ntBASIC2□□□□□ -2.09
COL5A3P25940 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2□□□□□ -2.09
COL5A3P25940 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 MTND5P35-201ENST00000557537 1720 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.99□□□□□ -2.09
COL5A3P25940 MTCO1P4-201ENST00000520516 1409 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL5A3P25940 SNORD56.5-201ENST00000364281 72 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AL445183.3-201ENST00000414168 502 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 LSM1P1-201ENST00000438629 273 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AL121594.1-201ENST00000475906 575 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AC010625.1-201ENST00000511296 403 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AC008494.2-201ENST00000514544 370 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 SNORD59.2-201ENST00000516873 68 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC1.99□□□□□ -2.09
COL5A3P25940 AC008562.1-201ENST00000521763 330 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.99□□□□□ -2.09
COL5A3P25940 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC1.99□□□□□ -2.09
COL5A3P25940 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.99□□□□□ -2.09
COL5A3P25940 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC1.99□□□□□ -2.09
COL5A3P25940 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.99□□□□□ -2.09
COL5A3P25940 MYL12BP1-201ENST00000569826 507 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 MIR3618-201ENST00000580330 88 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AP001033.2-201ENST00000609701 1003 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 AC098679.5-201ENST00000624394 571 ntBASIC1.99□□□□□ -2.09
COL5A3P25940 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
COL5A3P25940 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 AL049737.1-201ENST00000413920 1403 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.98□□□□□ -2.09
COL5A3P25940 AC012497.1-201ENST00000429392 575 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC1.98□□□□□ -2.09
COL5A3P25940 RPS15AP7-201ENST00000439294 405 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 RPL21P104-201ENST00000464143 478 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 RAC1P5-201ENST00000512182 576 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC1.98□□□□□ -2.09
COL5A3P25940 AC104115.2-201ENST00000523026 687 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.98□□□□□ -2.09
COL5A3P25940 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.98□□□□□ -2.09
COL5A3P25940 SNORD53B-201ENST00000577887 78 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.98□□□□□ -2.09
COL5A3P25940 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.98□□□□□ -2.09
COL5A3P25940 LLPHP1-201ENST00000603571 367 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 AC079610.2-201ENST00000604818 690 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.98□□□□□ -2.09
COL5A3P25940 FAM157B-203ENST00000639350 358 ntBASIC1.98□□□□□ -2.09
COL5A3P25940 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL5A3P25940 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
COL5A3P25940 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 RNU1-42P-201ENST00000364033 160 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 AL035405.1-201ENST00000400795 710 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 MIR1303-201ENST00000408625 86 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC010385.1-201ENST00000412374 256 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 TATDN1P1-201ENST00000414123 891 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.97□□□□□ -2.09
COL5A3P25940 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 TPTE2P6-202ENST00000445572 1007 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC078857.1-201ENST00000469870 667 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RPS15AP17-201ENST00000470598 390 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC090255.1-201ENST00000495779 349 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RN7SKP277-201ENST00000516895 283 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC084851.1-201ENST00000529105 249 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 MIR3690-201ENST00000580266 75 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC018618.2-201ENST00000604770 446 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC016542.1-201ENST00000608259 493 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AL163051.2-201ENST00000618976 735 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC024595.1-201ENST00000623088 387 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC083865.1-201ENST00000636634 831 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 AL136520.1-201ENST00000600311 1322 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 MIR16-2-201ENST00000362117 81 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 AGR3-202ENST00000402239 563 ntTSL 2 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC092745.2-202ENST00000411880 369 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 UBE2D3P3-201ENST00000426992 425 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 FO393414.1-201ENST00000428697 1184 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.97□□□□□ -2.09
COL5A3P25940 AL512661.1-201ENST00000434586 1253 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms