Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.97□□□□□ -2.09
CPSF4O95639 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.97□□□□□ -2.09
CPSF4O95639 AC009314.1-201ENST00000603871 304 ntBASIC1.97□□□□□ -2.09
CPSF4O95639 AC123767.1-202ENST00000620407 817 ntBASIC1.97□□□□□ -2.09
CPSF4O95639 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.97□□□□□ -2.09
CPSF4O95639 AL138960.2-201ENST00000625145 535 ntBASIC1.97□□□□□ -2.09
CPSF4O95639 AP000553.5-201ENST00000641933 54 ntBASIC1.97□□□□□ -2.09
CPSF4O95639 OR4G11P-202ENST00000642116 1414 ntBASIC1.97□□□□□ -2.09
CPSF4O95639 CDR1-202ENST00000625883 1485 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 NACA3P-201ENST00000359690 648 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 RNU4-51P-201ENST00000364206 140 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 RNU6-173P-201ENST00000364215 104 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 RNA5SP138-201ENST00000365098 114 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 MIR135A2-201ENST00000384854 100 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 MIR493-201ENST00000385254 89 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CPSF4O95639 RNU6-882P-201ENST00000391025 103 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 RNA5SP252-201ENST00000391131 119 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 DHFRP6-201ENST00000401776 268 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL137014.1-201ENST00000420490 1226 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 AC027124.2-201ENST00000428249 105 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 AC004866.2-201ENST00000438285 481 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 RAC1P7-201ENST00000445367 377 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 OR6K5P-201ENST00000447050 945 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.96□□□□□ -2.1
CPSF4O95639 AL353691.1-201ENST00000451332 387 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 TRGVB-201ENST00000453257 471 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.96□□□□□ -2.1
CPSF4O95639 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 AC108734.3-201ENST00000481241 1165 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC023424.2-201ENST00000493479 777 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC090453.1-201ENST00000495560 436 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 RPL37P25-201ENST00000507308 276 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 HMGB1P28-201ENST00000507778 552 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 RNU6-276P-201ENST00000516114 96 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.96□□□□□ -2.1
CPSF4O95639 SNRPGP18-201ENST00000553000 214 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 HSPE1P3-201ENST00000559254 309 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 MTND3P13-201ENST00000574391 343 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 OR4K8P-201ENST00000578842 1048 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC079089.3-201ENST00000603094 673 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL031176.1-201ENST00000604554 466 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL133507.1-201ENST00000605269 557 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC012443.1-201ENST00000605605 231 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC009570.1-201ENST00000609599 745 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC024257.5-201ENST00000612739 531 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AC010378.1-201ENST00000619270 362 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.96□□□□□ -2.1
CPSF4O95639 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.96□□□□□ -2.1
CPSF4O95639 AC080100.1-201ENST00000624239 5356 ntBASIC1.96□□□□□ -2.1
CPSF4O95639 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CPSF4O95639 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF4O95639 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CPSF4O95639 AL513185.3-201ENST00000433335 1300 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CPSF4O95639 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CPSF4O95639 RNU1-73P-201ENST00000383971 164 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 RNU6-301P-201ENST00000384277 107 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 RNA5SP338-201ENST00000410495 85 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC068533.2-201ENST00000411872 306 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.95□□□□□ -2.1
CPSF4O95639 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.95□□□□□ -2.1
CPSF4O95639 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.95□□□□□ -2.1
CPSF4O95639 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.95□□□□□ -2.1
CPSF4O95639 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.95□□□□□ -2.1
CPSF4O95639 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.95□□□□□ -2.1
CPSF4O95639 RPL30P14-201ENST00000482744 348 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 MTCYBP17-201ENST00000503579 789 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
CPSF4O95639 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.95□□□□□ -2.1
CPSF4O95639 AP001804.3-201ENST00000525146 880 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CPSF4O95639 SLC2A13P1-201ENST00000531560 322 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 HIGD1AP17-201ENST00000554576 276 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.95□□□□□ -2.1
CPSF4O95639 VN1R83P-201ENST00000595685 445 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 NUTF2P8-201ENST00000604593 363 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC069304.2-201ENST00000605154 435 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC018645.2-201ENST00000609151 472 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC025588.4-201ENST00000615802 908 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 AC004808.1-201ENST00000627671 721 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.95□□□□□ -2.1
CPSF4O95639 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CPSF4O95639 MTND4P1-201ENST00000457501 1466 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CPSF4O95639 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 SNORA51.11-201ENST00000384442 131 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 ANAPC10P1-201ENST00000395991 556 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms