Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MTATP6P20-201ENST00000414147 562 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.6□□□□□ -1.99
CLDN9O95484 AL513175.2-201ENST00000422071 443 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 ATP5F1P1-201ENST00000433775 569 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 RPL39P40-201ENST00000445481 146 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 UBBP3-201ENST00000445497 241 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 DDX3P2-201ENST00000446138 111 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.6□□□□□ -1.99
CLDN9O95484 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.6□□□□□ -1.99
CLDN9O95484 RPS27AP9-201ENST00000477681 438 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC090525.1-201ENST00000479116 478 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 LARP1BP2-201ENST00000486594 519 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 HMGB1P36-201ENST00000487709 576 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC009901.1-201ENST00000506703 541 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC079395.1-201ENST00000510981 262 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC118465.1-201ENST00000513820 1271 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC087373.1-201ENST00000524920 491 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AP003497.1-201ENST00000528472 562 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC007954.1-201ENST00000554198 494 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.6□□□□□ -1.99
CLDN9O95484 AC023813.2-201ENST00000564321 469 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 MTCO3P13-201ENST00000577757 781 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC091057.2-201ENST00000602594 792 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.6□□□□□ -1.99
CLDN9O95484 AL359198.2-201ENST00000611836 194 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 AC107075.1-201ENST00000613695 314 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.6□□□□□ -1.99
CLDN9O95484 MIR4275-201ENST00000636486 87 ntBASIC2.6□□□□□ -1.99
CLDN9O95484 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.6□□□□□ -1.99
CLDN9O95484 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.59□□□□□ -1.99
CLDN9O95484 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CLDN9O95484 FTLP6-201ENST00000355274 422 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 SNORA80A-201ENST00000363922 136 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU1-112P-201ENST00000364401 164 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU6-7-201ENST00000364784 107 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU6-8-201ENST00000365467 107 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -1.99
CLDN9O95484 RNU6-114P-201ENST00000384704 105 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU6-1176P-201ENST00000390955 107 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 MTND4P13-201ENST00000402078 1023 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CLDN9O95484 RNU4-22P-201ENST00000411058 166 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 TPMTP3-201ENST00000411928 735 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC099548.1-201ENST00000421443 426 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.59□□□□□ -1.99
CLDN9O95484 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.59□□□□□ -1.99
CLDN9O95484 AL135938.1-201ENST00000443141 297 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.59□□□□□ -1.99
CLDN9O95484 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 Z96811.1-201ENST00000445880 108 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC005410.1-202ENST00000460347 485 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC104563.1-201ENST00000476147 376 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RPS27P26-201ENST00000494583 239 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU6-1282P-201ENST00000516735 96 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
CLDN9O95484 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC2.59□□□□□ -1.99
CLDN9O95484 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.59□□□□□ -1.99
CLDN9O95484 MIR4635-201ENST00000583759 79 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.59□□□□□ -1.99
CLDN9O95484 AP001269.3-201ENST00000588718 329 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RPL23AP78-201ENST00000599928 470 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 RPL23AP88-201ENST00000605759 454 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.59□□□□□ -1.99
CLDN9O95484 AC245297.2-201ENST00000610119 565 ntBASIC2.59□□□□□ -1.99
CLDN9O95484 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.59□□□□□ -1.99
CLDN9O95484 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.59□□□□□ -1.99
CLDN9O95484 AC011477.1-204ENST00000623416 1325 ntBASIC2.59□□□□□ -2
CLDN9O95484 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
CLDN9O95484 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
CLDN9O95484 Y_RNA.192-201ENST00000363977 102 ntBASIC2.58□□□□□ -2
CLDN9O95484 SNORA23-201ENST00000365128 182 ntBASIC2.58□□□□□ -2
CLDN9O95484 RNU6-744P-201ENST00000365557 107 ntBASIC2.58□□□□□ -2
CLDN9O95484 SNORD116.1-201ENST00000365628 92 ntBASIC2.58□□□□□ -2
CLDN9O95484 RNU1-39P-201ENST00000383897 165 ntBASIC2.58□□□□□ -2
CLDN9O95484 RNU6-1316P-201ENST00000384242 108 ntBASIC2.58□□□□□ -2
CLDN9O95484 Y_RNA.465-201ENST00000384293 102 ntBASIC2.58□□□□□ -2
CLDN9O95484 MIR767-201ENST00000390228 109 ntBASIC2.58□□□□□ -2
CLDN9O95484 RNA5SP354-201ENST00000391247 136 ntBASIC2.58□□□□□ -2
CLDN9O95484 RPL19P1-201ENST00000411635 428 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC007919.1-201ENST00000429380 217 ntBASIC2.58□□□□□ -2
CLDN9O95484 ZYG11AP1-201ENST00000430329 837 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.58□□□□□ -2
CLDN9O95484 RPS25P9-201ENST00000435591 252 ntBASIC2.58□□□□□ -2
CLDN9O95484 SNRPEP7-201ENST00000438350 220 ntBASIC2.58□□□□□ -2
CLDN9O95484 RPS24P13-201ENST00000442520 397 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC009296.1-201ENST00000443146 155 ntBASIC2.58□□□□□ -2
CLDN9O95484 BMI1P1-201ENST00000445879 941 ntBASIC2.58□□□□□ -2
CLDN9O95484 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 RPL21P134-201ENST00000453468 483 ntBASIC2.58□□□□□ -2
CLDN9O95484 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms