Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4BO75351 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 AC073343.1-201ENST00000328239 651 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 Y_RNA.72-201ENST00000362894 103 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 Y_RNA.157-201ENST00000363638 102 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 U3.15-201ENST00000365398 212 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS4BO75351 AL591416.1-201ENST00000404015 867 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4BO75351 CRYBB2P1-203ENST00000415709 538 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 AC090774.1-201ENST00000435925 246 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 RPL23AP52-201ENST00000439311 478 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 GAPDHP27-201ENST00000447427 1020 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 HMGB3P22-202ENST00000451823 572 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 MTND1P11-201ENST00000456661 876 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 PMCHL2-203ENST00000457791 237 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4BO75351 MRPS17P3-201ENST00000465453 385 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 RPL23AP2-201ENST00000471227 466 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
VPS4BO75351 AC078785.3-201ENST00000476607 425 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 RN7SL271P-201ENST00000487601 295 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC146944.2-203ENST00000502493 354 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC116562.3-201ENST00000506136 177 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC139495.1-202ENST00000513164 354 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 AC068587.5-201ENST00000528506 175 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AP005435.4-201ENST00000529514 284 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS4BO75351 AC123904.3-201ENST00000547218 814 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4BO75351 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4BO75351 AC005261.5-201ENST00000596280 355 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AL117336.2-201ENST00000602435 335 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AC012443.1-201ENST00000605605 231 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 FAM27D1-201ENST00000612308 341 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 MIR6875-201ENST00000617506 72 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4BO75351 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS4BO75351 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
VPS4BO75351 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4BO75351 DDX10P1-201ENST00000448545 1933 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 AL354685.2-201ENST00000448218 1447 ntBASIC4.03□□□□□ -1.76
VPS4BO75351 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.03□□□□□ -1.77
VPS4BO75351 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.77
VPS4BO75351 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4BO75351 LARP1BP1-201ENST00000506036 1359 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS4BO75351 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4BO75351 BDP1P-201ENST00000582658 1990 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 RIOK3P1-201ENST00000418778 1528 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4BO75351 MAPK10-253ENST00000641010 4072 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 XIAPP3-201ENST00000312918 795 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 RNU1-14P-201ENST00000362759 152 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC108032.1-201ENST00000416706 207 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC011742.1-201ENST00000431448 434 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 MTCO3P45-201ENST00000443036 613 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4BO75351 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC234775.1-201ENST00000454247 670 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 RPL7L1P8-201ENST00000469911 741 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AP000926.1-201ENST00000479573 241 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC025465.4-201ENST00000513422 638 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 RN7SKP219-201ENST00000516825 296 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC126177.3-201ENST00000551839 688 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS4BO75351 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC024619.4-201ENST00000580924 316 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 MIR4719-201ENST00000585233 84 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS4BO75351 AC018638.8-201ENST00000588755 281 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 AL034351.1-201ENST00000605288 668 ntBASIC4.02□□□□□ -1.77
VPS4BO75351 RNU4-89P-201ENST00000607443 133 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms