Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNA5SP337-201ENST00000517007 109 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.25□□□□□ -1.89
LMX1BO60663 MIR3146-201ENST00000580367 79 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC004853.1-201ENST00000604902 698 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AL353621.2-201ENST00000605340 133 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC121334.2-201ENST00000605387 271 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AL158211.4-201ENST00000606988 584 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 U3.45-201ENST00000607547 219 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 TUG1_1.1-201ENST00000610654 145 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 Y_RNA.804-201ENST00000615262 101 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC009161.2-201ENST00000624626 138 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 CR381572.1-201ENST00000625098 102 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC024614.3-201ENST00000637860 256 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.25□□□□□ -1.89
LMX1BO60663 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC009902.3-201ENST00000606235 2172 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.25□□□□□ -1.89
LMX1BO60663 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
LMX1BO60663 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.24□□□□□ -1.89
LMX1BO60663 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.24□□□□□ -1.89
LMX1BO60663 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC007685.1-201ENST00000329806 452 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 Y_RNA.160-201ENST00000363677 92 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 RNY3P3-201ENST00000363816 102 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 RNU6-283P-201ENST00000364788 107 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 SNORA20.2-201ENST00000383922 131 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 U1.1-201ENST00000384101 164 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.24□□□□□ -1.89
LMX1BO60663 OR51A5P-201ENST00000415429 942 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 RPL21P111-201ENST00000418453 477 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 ZNF90P2-204ENST00000419323 1075 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC002075.2-201ENST00000425207 252 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AL138785.1-201ENST00000425821 331 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 RPL23AP30-201ENST00000432419 501 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.24□□□□□ -1.89
LMX1BO60663 AL606489.2-201ENST00000433886 234 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LMX1BO60663 RPL7P54-201ENST00000438336 674 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC083798.1-201ENST00000472671 131 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC010683.1-201ENST00000473673 378 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC026427.2-201ENST00000506228 536 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC018710.1-201ENST00000506509 158 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 SCARNA13-201ENST00000516672 275 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 IGKV2D-36-201ENST00000518643 226 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC008489.1-201ENST00000524271 483 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.24□□□□□ -1.89
LMX1BO60663 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC090615.1-201ENST00000577519 154 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC060771.1-201ENST00000582031 164 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 UBE2V2P2-201ENST00000587677 504 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.24□□□□□ -1.89
LMX1BO60663 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LMX1BO60663 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.24□□□□□ -1.89
LMX1BO60663 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC244205.2-202ENST00000635781 342 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 AC099654.5-201ENST00000636479 350 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
LMX1BO60663 AC092326.2-201ENST00000624772 1561 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 MTND4P12-201ENST00000498999 1377 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
LMX1BO60663 MTCO1P12-201ENST00000414273 1543 ntBASIC3.24□□□□□ -1.89
LMX1BO60663 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
LMX1BO60663 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.23□□□□□ -1.89
LMX1BO60663 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LMX1BO60663 RNU6-1322P-201ENST00000364309 107 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 RNU6-877P-201ENST00000383868 107 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 RNU6-74P-201ENST00000384235 107 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 Y_RNA.481-201ENST00000384373 102 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 U3.20-201ENST00000390909 217 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 MIR1183-201ENST00000408856 89 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 SNRPEP10-201ENST00000420249 274 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL035423.1-201ENST00000420331 213 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC012498.1-201ENST00000424037 437 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL591419.1-201ENST00000427423 339 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 FTH1P6-201ENST00000430768 320 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 HSPD1P21-201ENST00000436541 245 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 FTH1P1-201ENST00000437933 532 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.23□□□□□ -1.89
LMX1BO60663 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 PRDX3P3-201ENST00000447765 522 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 SNRPGP5-201ENST00000456003 220 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 MTND1P11-201ENST00000456661 876 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 SNORD121B-201ENST00000458838 81 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 RPS4XP10-201ENST00000465034 731 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 MTCO2P29-201ENST00000465212 189 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms