Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC131902.3-201ENST00000611767 581 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AL355365.1-201ENST00000616480 294 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AC091905.1-201ENST00000624400 311 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC099654.13-201ENST00000639774 207 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC11O43248 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC11O43248 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC11O43248 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 RNY4P34-201ENST00000364779 95 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 RNA5SP267-201ENST00000364893 126 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL365338.1-201ENST00000422282 858 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 HIGD1AP11-201ENST00000438361 280 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 MTND6P13-201ENST00000443510 523 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 RPS3AP12-201ENST00000443616 753 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AC140076.1-201ENST00000449897 361 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 SNORD42A-201ENST00000459584 64 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC11O43248 NDUFB4P2-201ENST00000509515 391 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AC117522.2-201ENST00000510049 657 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 TTC39CP1-201ENST00000512513 755 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AP003122.4-201ENST00000530980 758 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXC11O43248 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC11O43248 AC022146.1-201ENST00000595307 847 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AC006077.1-201ENST00000604746 343 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AP000860.1-201ENST00000605250 559 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC11O43248 AP003355.3-201ENST00000623465 114 ntBASIC3.67□□□□□ -1.82
HOXC11O43248 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC11O43248 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.67□□□□□ -1.82
HOXC11O43248 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC11O43248 AC110774.1-201ENST00000623567 2018 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC11O43248 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC11O43248 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC11O43248 AC007785.2-201ENST00000598627 1916 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC11O43248 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HOXC11O43248 RNY1P12-201ENST00000364251 105 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 U3.11-201ENST00000364476 212 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXC11O43248 RNU6-741P-201ENST00000383889 107 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 DBIP2-201ENST00000419076 262 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AL158156.1-201ENST00000422509 473 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC007919.1-201ENST00000429380 217 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 PGBD4P3-201ENST00000440731 581 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC020550.1-201ENST00000447385 163 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC11O43248 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 SNORD97-201ENST00000459187 142 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 RPL37P6-201ENST00000460682 294 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AC008155.2-201ENST00000464337 397 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 MTCO2P29-201ENST00000465212 189 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 HMGN2P13-201ENST00000476476 274 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 RPL32P34-201ENST00000486380 400 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC010424.1-201ENST00000506336 297 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 RNU6-579P-201ENST00000516879 102 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC11O43248 CASP1P1-201ENST00000526345 212 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXC11O43248 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC119751.7-201ENST00000600494 245 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 DUXAP4-201ENST00000603046 613 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 AC110994.2-201ENST00000635481 492 ntBASIC3.66□□□□□ -1.82
HOXC11O43248 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXC11O43248 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.66□□□□□ -1.82
HOXC11O43248 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXC11O43248 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
HOXC11O43248 RIOK3P1-201ENST00000418778 1528 ntBASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms