Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.31□□□□□ -2.2
HMGN4O00479 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.31□□□□□ -2.2
HMGN4O00479 BX649567.1-201ENST00000642071 1134 ntBASIC1.31□□□□□ -2.2
HMGN4O00479 AC011477.1-204ENST00000623416 1325 ntBASIC1.31□□□□□ -2.2
HMGN4O00479 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
HMGN4O00479 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGN4O00479 U3.20-201ENST00000390909 217 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 SNORA67.5-201ENST00000391036 107 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 RN7SKP51-201ENST00000410781 304 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGN4O00479 ANKRD26P4-201ENST00000455755 950 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 RPL31P53-201ENST00000457065 348 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 RNA5SP233-201ENST00000459153 113 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.3□□□□□ -2.2
HMGN4O00479 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGN4O00479 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGN4O00479 PRELID3BP4-201ENST00000515476 571 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AC004923.2-201ENST00000529649 369 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGN4O00479 HSPE1P3-201ENST00000559254 309 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AC073111.2-201ENST00000605657 1075 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AC025594.3-201ENST00000613068 790 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 AP001486.3-201ENST00000615334 372 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.3□□□□□ -2.2
HMGN4O00479 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
HMGN4O00479 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.3□□□□□ -2.2
HMGN4O00479 RNU1-105P-201ENST00000363470 161 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGN4O00479 MIR493-201ENST00000385254 89 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 U3.29-201ENST00000391296 212 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 RNU6-174P-201ENST00000410406 106 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 RNU6-920P-201ENST00000410926 92 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGN4O00479 AC074117.2-201ENST00000417130 397 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGN4O00479 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
HMGN4O00479 AL121890.1-201ENST00000435457 205 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 SDCBPP1-201ENST00000440192 890 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 OSTCP8-201ENST00000445117 448 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 UBE2V2P4-201ENST00000447495 259 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AC004022.1-201ENST00000447766 1066 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.29□□□□□ -2.2
HMGN4O00479 AC008562.1-201ENST00000521763 330 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.29□□□□□ -2.2
HMGN4O00479 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGN4O00479 AL355812.1-201ENST00000603215 216 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AL096840.1-201ENST00000603287 93 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AP005137.2-201ENST00000609238 400 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AC091932.3-201ENST00000624223 323 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGN4O00479 AL022578.1-201ENST00000439330 1433 ntBASIC1.29□□□□□ -2.2
HMGN4O00479 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HMGN4O00479 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HMGN4O00479 RNU6-198P-201ENST00000384258 104 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 RNU6-997P-201ENST00000384725 107 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 PRRC2CP1-201ENST00000404428 159 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 CIR1P3-201ENST00000405137 479 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AL023807.1-201ENST00000407932 359 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.28□□□□□ -2.2
HMGN4O00479 AC006548.1-201ENST00000427470 102 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.28□□□□□ -2.2
HMGN4O00479 OR6K5P-201ENST00000447050 945 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 MTCYBP35-201ENST00000503630 1137 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 YWHAEP4-201ENST00000505390 198 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AC008494.2-201ENST00000514544 370 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 RNU7-193P-201ENST00000516723 65 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGN4O00479 AC103987.3-201ENST00000582071 292 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AC098826.3-201ENST00000603823 466 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 RMST_6.1-201ENST00000611980 203 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AL354950.1-201ENST00000614150 568 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 SDR42E1P2-201ENST00000614861 481 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 AC079395.3-201ENST00000615161 484 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 MIR7974-201ENST00000615835 79 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 SDR42E1P4-201ENST00000620894 481 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 CR381572.1-201ENST00000625098 102 ntBASIC1.28□□□□□ -2.2
HMGN4O00479 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HMGN4O00479 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HMGN4O00479 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
HMGN4O00479 RNU1-62P-201ENST00000362599 164 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 RNU6-1249P-201ENST00000363237 111 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
HMGN4O00479 MTATP6P31-201ENST00000406985 692 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 SPA17P1-201ENST00000416656 452 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 RPL31P63-201ENST00000422565 375 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 AL358075.3-201ENST00000426289 226 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
HMGN4O00479 AL627224.1-201ENST00000448334 444 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 TRGVB-201ENST00000453257 471 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.27□□□□□ -2.21
HMGN4O00479 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.27□□□□□ -2.21
HMGN4O00479 RN7SKP96-201ENST00000516948 297 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 RNU6-548P-201ENST00000517083 115 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 COX6B1P6-201ENST00000522347 255 ntBASIC1.27□□□□□ -2.21
HMGN4O00479 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms