Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CBX4O00257 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
CBX4O00257 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CBX4O00257 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CBX4O00257 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CBX4O00257 RNA5SP366-201ENST00000365454 123 ntBASIC4.4□□□□□ -1.71
CBX4O00257 RNU6-817P-201ENST00000391083 104 ntBASIC4.4□□□□□ -1.71
CBX4O00257 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AL645937.1-202ENST00000421799 937 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 HMGN2P21-201ENST00000447764 270 ntBASIC4.4□□□□□ -1.71
CBX4O00257 RPS24P6-201ENST00000452670 400 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC004801.2-202ENST00000463559 283 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 HMGB1P22-201ENST00000505315 124 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC020593.1-201ENST00000507399 299 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 FGF7P4-201ENST00000509595 295 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 Y_RNA.689-201ENST00000516589 107 ntBASIC4.4□□□□□ -1.71
CBX4O00257 MIR2116-201ENST00000517221 80 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.4□□□□□ -1.71
CBX4O00257 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CBX4O00257 AC109635.4-202ENST00000531666 412 ntBASIC4.4□□□□□ -1.71
CBX4O00257 SNRPGP16-201ENST00000533275 226 ntBASIC4.4□□□□□ -1.71
CBX4O00257 GLYCAM1-201ENST00000546596 285 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC011611.1-201ENST00000552179 197 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AL121576.1-201ENST00000556055 276 ntBASIC4.4□□□□□ -1.71
CBX4O00257 RPL21P7-201ENST00000557463 483 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC106782.4-201ENST00000568264 210 ntBASIC4.4□□□□□ -1.71
CBX4O00257 DPPA3P3-201ENST00000603842 430 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AL138721.1-201ENST00000616756 179 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC005858.4-201ENST00000623191 700 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC067931.1-201ENST00000624190 671 ntBASIC4.4□□□□□ -1.71
CBX4O00257 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CBX4O00257 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CBX4O00257 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.4□□□□□ -1.71
CBX4O00257 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CBX4O00257 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.4□□□□□ -1.71
CBX4O00257 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.4□□□□□ -1.71
CBX4O00257 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CBX4O00257 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CBX4O00257 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CBX4O00257 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CBX4O00257 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CBX4O00257 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.4□□□□□ -1.71
CBX4O00257 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CBX4O00257 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 DEFB108F-201ENST00000344638 222 ntBASIC4.39□□□□□ -1.71
CBX4O00257 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 RNU1-20P-201ENST00000363314 162 ntBASIC4.39□□□□□ -1.71
CBX4O00257 RN7SKP280-201ENST00000364196 304 ntBASIC4.39□□□□□ -1.71
CBX4O00257 RNA5SP22-201ENST00000365393 109 ntBASIC4.39□□□□□ -1.71
CBX4O00257 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CBX4O00257 RNA5SP36-201ENST00000410197 133 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AL353678.1-201ENST00000422735 741 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AL157831.1-201ENST00000426134 473 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.39□□□□□ -1.71
CBX4O00257 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 RPL23AP31-201ENST00000456160 467 ntBASIC4.39□□□□□ -1.71
CBX4O00257 RNU6-1208P-201ENST00000459588 107 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AC092451.1-201ENST00000480211 153 ntBASIC4.39□□□□□ -1.71
CBX4O00257 Y_RNA.654-201ENST00000497848 106 ntBASIC4.39□□□□□ -1.71
CBX4O00257 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 RNU4-49P-201ENST00000516080 140 ntBASIC4.39□□□□□ -1.71
CBX4O00257 RNA5SP49-201ENST00000516450 115 ntBASIC4.39□□□□□ -1.71
CBX4O00257 Vault.1-201ENST00000516474 102 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.39□□□□□ -1.71
CBX4O00257 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.39□□□□□ -1.71
CBX4O00257 AC005951.2-201ENST00000576282 495 ntBASIC4.39□□□□□ -1.71
CBX4O00257 MIR4429-201ENST00000580105 73 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AC010928.3-201ENST00000587712 541 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AC005498.1-201ENST00000592125 465 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AC092807.2-201ENST00000609367 243 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AC007546.1-201ENST00000619452 559 ntBASIC4.39□□□□□ -1.71
CBX4O00257 AL445363.3-201ENST00000623080 671 ntBASIC4.39□□□□□ -1.71
CBX4O00257 MIR3653-201ENST00000625572 110 ntBASIC4.39□□□□□ -1.71
CBX4O00257 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CBX4O00257 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.39□□□□□ -1.71
CBX4O00257 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CBX4O00257 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CBX4O00257 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CBX4O00257 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.38□□□□□ -1.71
CBX4O00257 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CBX4O00257 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CBX4O00257 AP001350.1-201ENST00000601906 1524 ntBASIC4.38□□□□□ -1.71
CBX4O00257 SPRR2C-201ENST00000290702 219 ntBASIC4.38□□□□□ -1.71
CBX4O00257 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.38□□□□□ -1.71
CBX4O00257 MIR372-201ENST00000362225 67 ntBASIC4.38□□□□□ -1.71
CBX4O00257 MIR383-201ENST00000362257 73 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms