Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC85CA6NKD9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 DEFB108F-201ENST00000344638 222 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 Y_RNA.166-201ENST00000363730 102 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU4-20P-201ENST00000365601 151 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU6-38P-201ENST00000384085 107 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU6-14P-201ENST00000384630 106 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU6-817P-201ENST00000391083 104 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC008850.1-201ENST00000427546 362 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 BX276092.6-201ENST00000430476 250 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 MTND3P16-201ENST00000452205 344 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 BX276092.8-201ENST00000455722 250 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU6-333P-201ENST00000459117 107 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RN7SL197P-201ENST00000466981 299 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC108860.1-201ENST00000484521 383 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RPL23AP55-201ENST00000498163 452 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 RNU6-840P-201ENST00000517275 65 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AL121576.1-201ENST00000556055 276 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC005951.2-201ENST00000576282 495 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC008521.1-201ENST00000587471 187 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AL589994.2-201ENST00000621124 579 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 AL133412.1-201ENST00000380194 2992 ntBASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC85CA6NKD9 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC067945.1-201ENST00000342609 618 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 RNA5SP175-201ENST00000364275 119 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 U3.12-201ENST00000364498 214 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 RNA5SP126-201ENST00000365092 109 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AL451054.2-201ENST00000420896 202 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 MTCO3P46-201ENST00000425787 232 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 HMGN2P27-201ENST00000427352 270 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 ERLEC1P1-201ENST00000433806 578 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AL645939.1-201ENST00000453429 797 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 HMGN1P11-201ENST00000508668 303 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AL592156.1-201ENST00000508758 304 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC104619.4-201ENST00000510773 249 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 LRRC34P2-201ENST00000514850 553 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC078814.3-201ENST00000553036 491 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 RPL23AP84-201ENST00000571193 464 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC006270.2-201ENST00000578523 652 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC104763.2-201ENST00000604179 382 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AL354984.3-201ENST00000604803 325 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC007619.2-201ENST00000605743 379 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 RNU6-89P-201ENST00000606519 100 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC012409.4-201ENST00000612923 249 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AL355810.1-201ENST00000614629 552 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 TPTE2P4-201ENST00000258589 1605 ntBASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC85CA6NKD9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.65
CCDC85CA6NKD9 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 RNU6-767P-201ENST00000384132 107 ntBASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.77□□□□□ -1.65
CCDC85CA6NKD9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms