Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL713866.2-201ENST00000603579 219 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AL031666.3-201ENST00000609320 1006 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 U3.53-201ENST00000628922 216 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC093535.2-201ENST00000624769 2326 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 ZNF137P-201ENST00000456718 1920 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 HSPE1P11-201ENST00000339579 310 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.60-201ENST00000362831 98 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 SNORD116-11-201ENST00000383882 92 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RNU1-44P-201ENST00000384453 163 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RPL36AP36-201ENST00000418616 301 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC096632.1-201ENST00000427395 310 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MTND5P15-201ENST00000434246 349 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MTATP6P16-201ENST00000434543 526 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RPS26P40-201ENST00000435209 294 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RPL12P3-201ENST00000440080 396 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 DYNLT3P2-201ENST00000442517 295 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 NANOGP10-201ENST00000453325 895 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RPL23AP41-201ENST00000484754 458 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC093270.2-201ENST00000486157 792 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC090453.1-201ENST00000495560 436 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MTND1P19-201ENST00000511780 315 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 RNU6-202P-201ENST00000515998 96 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MTND4P7-201ENST00000523876 130 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC015967.1-201ENST00000619893 476 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 AL133243.3-201ENST00000617415 3004 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 IQCB2P-201ENST00000401788 1633 ntBASIC5.19□□□□□ -1.58
CCDC39Q9UFE4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AL590240.1-201ENST00000334118 313 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 RNU1-15P-201ENST00000353977 144 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 SNORD3E-201ENST00000362899 217 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 RNU6-593P-201ENST00000364716 112 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 RNU6-1029P-201ENST00000384109 107 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.555-201ENST00000384673 110 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 RNU6-328P-201ENST00000390887 106 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 SNORA75.6-201ENST00000391318 127 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR298-201ENST00000401212 88 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 PGBD4P6-201ENST00000421501 610 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC139712.2-201ENST00000424302 339 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 ELOCP18-201ENST00000434209 337 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 OSTCP8-201ENST00000445117 448 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 SCARNA10-201ENST00000459255 330 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC105129.1-201ENST00000560250 297 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR4703-201ENST00000577728 79 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR4436B2-201ENST00000581415 91 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR4512-201ENST00000583257 77 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR4436B1-201ENST00000583272 91 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AL353997.4-201ENST00000586196 166 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC011477.5-201ENST00000586571 259 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AL355297.3-201ENST00000604082 446 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC131238.1-201ENST00000617135 328 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MIR4727-201ENST00000622232 55 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms