Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 MRPL50P4-201ENST00000446432 475 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AL451050.1-201ENST00000450126 415 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 RNU6-1208P-201ENST00000459588 107 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 RPL21P8-201ENST00000465083 535 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 RN7SL812P-201ENST00000493791 279 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC025445.1-201ENST00000502728 300 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC103851.1-201ENST00000506833 274 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 MTCO3P9-201ENST00000506989 781 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 Y_RNA.665-201ENST00000516177 98 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 RNU6-352P-201ENST00000516908 107 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 MIR4644-201ENST00000579929 84 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC069061.3-201ENST00000582254 823 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC078795.3-201ENST00000602913 472 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC104763.2-201ENST00000604179 382 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AL592436.1-201ENST00000605135 558 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AL049539.1-201ENST00000611964 459 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 MIR6780A-201ENST00000615089 68 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 AC006065.5-201ENST00000623427 349 ntBASIC3.91□□□□□ -1.78
VSX1Q9NZR4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
VSX1Q9NZR4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 AP001350.1-201ENST00000601906 1524 ntBASIC3.9□□□□□ -1.78
VSX1Q9NZR4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
VSX1Q9NZR4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 RNU6-188P-201ENST00000364207 107 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.373-201ENST00000365600 103 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 RNU6-946P-201ENST00000383878 107 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 RPS23P10-201ENST00000416185 486 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL353678.1-201ENST00000422735 741 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL590639.1-201ENST00000456484 337 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 SNORD108-201ENST00000459332 71 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 KLHL2P1-201ENST00000508691 521 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC006499.6-201ENST00000511169 607 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 RNA5SP309-201ENST00000516670 106 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 OR4H12P-201ENST00000556269 907 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 RPL23AP84-201ENST00000571193 464 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC079587.1-201ENST00000603846 277 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL138889.2-201ENST00000603883 242 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL050343.2-201ENST00000607338 280 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL365204.3-201ENST00000612448 685 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AL160413.1-201ENST00000622780 310 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 MIR1302-1-201ENST00000637932 143 ntBASIC3.9□□□□□ -1.79
VSX1Q9NZR4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
VSX1Q9NZR4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 OR56B2P-202ENST00000641377 2453 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 MAPK10-372ENST00000641954 3413 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 SNORD113-7-201ENST00000363762 77 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RNU6-522P-201ENST00000364497 107 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.315-201ENST00000365117 102 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.387-201ENST00000383918 102 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RNU6-882P-201ENST00000391025 103 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RPL32P23-201ENST00000397237 405 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC119751.6-201ENST00000416712 186 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RPL7AP25-201ENST00000423357 805 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RPL21P112-201ENST00000434403 463 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 CYCSP43-201ENST00000438233 310 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms