Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-989P-201ENST00000362756 107 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RNU4-24P-201ENST00000364565 139 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RNU4-75P-201ENST00000364621 146 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RNU6-730P-201ENST00000383954 104 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 MIR512-1-201ENST00000384913 84 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP28Q96RU2 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 HMGB1P17-201ENST00000403495 628 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RN7SKP123-201ENST00000410732 291 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 TPMTP2-201ENST00000414372 726 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 FNDC3CP-201ENST00000420795 1155 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 CYCSP46-201ENST00000423569 204 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC233728.2-201ENST00000425348 757 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.29□□□□□ -1.88
USP28Q96RU2 DPPA2P1-201ENST00000428060 556 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 DLGAP5P1-201ENST00000430307 464 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 SNRPEP4-201ENST00000435815 279 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AL512286.1-201ENST00000439244 400 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RABEPKP1-201ENST00000440529 1026 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 MTND5P14-201ENST00000441481 1267 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.29□□□□□ -1.88
USP28Q96RU2 GAPDHP27-201ENST00000447427 1020 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC009961.3-201ENST00000449832 765 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 USP9YP34-201ENST00000453983 808 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC091179.1-201ENST00000461606 579 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.29□□□□□ -1.88
USP28Q96RU2 RAP1BP2-201ENST00000478270 544 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC114981.1-201ENST00000503897 678 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC091435.1-201ENST00000505442 584 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC091965.2-201ENST00000512324 613 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC022447.1-201ENST00000515358 464 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RNA5SP385-201ENST00000515947 110 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 Y_RNA.695-201ENST00000516715 107 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 FAM60DP-201ENST00000524174 632 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AP000857.1-201ENST00000532151 543 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AC103987.3-201ENST00000582071 292 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 MIR548AB-201ENST00000584917 84 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC008962.1-201ENST00000605729 304 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 RN7SKP299-201ENST00000606679 301 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AL159169.3-201ENST00000608871 561 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC107871.2-201ENST00000612894 502 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AL360181.4-201ENST00000621752 134 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC010338.1-201ENST00000621823 717 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC006111.3-201ENST00000622137 383 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AC095031.1-201ENST00000623685 672 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 CYP3A51P-201ENST00000633513 256 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 AC103988.1-201ENST00000566382 2177 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.28□□□□□ -1.88
USP28Q96RU2 DDX43P2-201ENST00000604753 1354 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 Y_RNA.97-201ENST00000363094 102 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 SNORA9.2-201ENST00000365361 133 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MIR34B-201ENST00000385076 84 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RNA5SP171-201ENST00000391071 115 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
USP28Q96RU2 MTND4LP20-201ENST00000402379 270 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MTCYBP36-201ENST00000404146 440 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RNU6-1077P-201ENST00000410506 102 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RN7SKP142-201ENST00000411236 328 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.28□□□□□ -1.88
USP28Q96RU2 Z99497.1-201ENST00000421282 135 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AL445669.1-201ENST00000426743 755 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MED14P1-201ENST00000430517 648 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AL365184.2-201ENST00000431139 435 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MTND4P6-201ENST00000438297 472 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.28□□□□□ -1.88
USP28Q96RU2 HMGB1P25-201ENST00000468402 607 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RPL27AP5-201ENST00000469428 449 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RPL31P50-201ENST00000471002 296 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC090453.1-201ENST00000495560 436 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC010424.1-201ENST00000506336 297 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC108043.1-201ENST00000512696 574 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP28Q96RU2 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.28□□□□□ -1.88
USP28Q96RU2 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC073544.2-201ENST00000601155 540 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC084757.4-201ENST00000616350 526 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC002076.2-201ENST00000617362 122 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC073968.1-201ENST00000618594 637 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 AC006927.3-201ENST00000638789 384 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP28Q96RU2 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
USP28Q96RU2 AC108206.1-201ENST00000570186 4159 ntBASIC3.28□□□□□ -1.88
USP28Q96RU2 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.28□□□□□ -1.88
USP28Q96RU2 ZNF807-201ENST00000328088 1707 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms