Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MTND1P9-201ENST00000453775 944 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AP004217.1-201ENST00000480579 346 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC093281.2-201ENST00000510153 597 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 HSPE1P20-201ENST00000538133 289 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 HMGB1P14-201ENST00000557424 591 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 BNIP3P39-201ENST00000601077 554 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AL596327.1-201ENST00000603629 213 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AP000787.2-201ENST00000604432 568 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC112220.3-201ENST00000605502 502 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC090115.4-201ENST00000609970 188 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC097478.2-201ENST00000610572 514 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC079228.1-201ENST00000624774 1049 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AL161431.1-201ENST00000618966 4205 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.84□□□□□ -1.96
VPS35Q96QK1 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.84□□□□□ -1.96
VPS35Q96QK1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 ATG3P1-201ENST00000419507 911 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL645937.1-202ENST00000421799 937 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL512844.2-201ENST00000433990 593 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 RPS20P5-201ENST00000434808 360 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 RPS29P12-201ENST00000460178 152 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL135752.1-201ENST00000479477 471 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AP001025.2-201ENST00000490908 477 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC097462.2-201ENST00000504623 481 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 RNU6-928P-201ENST00000516876 104 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 SCARNA1-201ENST00000517138 166 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 RNU6-840P-201ENST00000517275 65 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AMZ2P1-203ENST00000565833 850 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 MTND1P8-201ENST00000571424 950 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC023043.3-201ENST00000593113 385 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL160281.1-201ENST00000605307 311 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AL158042.1-201ENST00000605338 460 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC009974.1-201ENST00000608881 455 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC013470.4-201ENST00000619978 986 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC009268.2-201ENST00000621925 457 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC009039.2-201ENST00000624524 529 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 AP000676.4-201ENST00000624659 623 ntBASIC2.83□□□□□ -1.96
VPS35Q96QK1 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS35Q96QK1 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS35Q96QK1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS35Q96QK1 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 MIR512-1-201ENST00000384913 84 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 SPA17P1-201ENST00000416656 452 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 AC083875.1-201ENST00000419509 405 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 FGF7P5-201ENST00000441829 291 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 AL135938.1-201ENST00000443141 297 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 RNU6-420P-201ENST00000458780 107 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 RPL21P41-201ENST00000459863 264 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 AC104090.1-201ENST00000506341 1171 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 HIGD1AP13-201ENST00000509878 289 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 AC005951.2-201ENST00000576282 495 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 AC091057.2-201ENST00000602594 792 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 DUXAP4-201ENST00000603046 613 ntBASIC2.82□□□□□ -1.96
VPS35Q96QK1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS35Q96QK1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS35Q96QK1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms