Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RN7SKP227-201ENST00000364445 330 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RNU6-450P-201ENST00000364654 107 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RNU1-115P-201ENST00000365329 160 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RNU6-596P-201ENST00000365395 98 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.455-201ENST00000384230 98 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 MIR589-201ENST00000385238 99 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.645-201ENST00000391229 102 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RNU2-71P-201ENST00000411395 189 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 HMGB3P2-201ENST00000411913 584 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC016769.2-201ENST00000414815 475 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC087650.1-201ENST00000431445 468 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL512844.2-201ENST00000433990 593 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC099799.1-201ENST00000439809 192 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RPS11P7-201ENST00000442125 465 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL163193.1-201ENST00000444895 788 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL353752.1-201ENST00000454946 260 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RN7SL177P-201ENST00000476596 299 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RN7SL814P-201ENST00000487715 300 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RNA5SP373-201ENST00000517271 95 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 HSBP1P1-201ENST00000555205 166 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 CPDP1-201ENST00000579660 283 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC004852.3-201ENST00000614131 326 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC022467.1-201ENST00000614738 749 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL161629.2-201ENST00000615347 275 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 MIR6839-201ENST00000620425 113 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC074101.1-201ENST00000637861 241 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ZNF72P-201ENST00000425869 1908 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AL031595.2-201ENST00000624215 19071 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 Z95331.1-201ENST00000623075 23112 ntBASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 AC023421.1-201ENST00000590535 1785 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AL359693.1-201ENST00000614959 2407 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 MIR133A2-201ENST00000347538 102 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 FTLP6-201ENST00000355274 422 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RNA5SP183-201ENST00000362452 119 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.39-201ENST00000362620 98 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RNY1P16-201ENST00000363063 111 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 DEFB109C-201ENST00000382575 264 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 DEFB109B-201ENST00000382656 264 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 SNORA5.1-201ENST00000384275 131 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RNU6-1156P-201ENST00000410365 100 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AL356535.1-201ENST00000440335 398 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RNU2-58P-201ENST00000516403 183 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RNU4-77P-201ENST00000516692 156 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AP004242.1-201ENST00000533701 349 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 SUB1P3-201ENST00000564581 315 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RN7SL708P-201ENST00000580952 299 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 AP000787.2-201ENST00000604432 568 ntBASIC4.09□□□□□ -1.75
CCDC140Q96MF4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms