Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 RNU2-71P-201ENST00000411395 189 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 RPS7P13-201ENST00000413955 498 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 DBIP2-201ENST00000419076 262 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 MTCO2P34-201ENST00000421994 607 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC006989.1-201ENST00000427212 131 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.89□□□□□ -1.79
USP38Q8NB14 MTCO1P19-201ENST00000443487 500 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 RPL32P28-201ENST00000443577 397 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.89□□□□□ -1.79
USP38Q8NB14 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.89□□□□□ -1.79
USP38Q8NB14 ARL2BPP6-201ENST00000512757 439 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 RNU6-1231P-201ENST00000517185 103 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC022616.6-201ENST00000520479 119 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC022878.1-201ENST00000530684 149 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 OR4T1P-201ENST00000554933 911 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.89□□□□□ -1.79
USP38Q8NB14 COX6CP3-201ENST00000580869 223 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AL359999.1-201ENST00000604513 294 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC007038.2-201ENST00000608095 740 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AL592295.2-201ENST00000612578 206 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC009159.1-201ENST00000618386 642 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC009878.1-201ENST00000621819 340 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC092628.2-201ENST00000622492 339 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 AC019226.1-201ENST00000625666 515 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.89□□□□□ -1.79
USP38Q8NB14 TNPO1P3-201ENST00000436471 2662 ntBASIC3.89□□□□□ -1.79
USP38Q8NB14 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.89□□□□□ -1.79
USP38Q8NB14 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.89□□□□□ -1.79
USP38Q8NB14 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.89□□□□□ -1.79
USP38Q8NB14 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.89□□□□□ -1.79
USP38Q8NB14 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP38Q8NB14 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 MFSD8-233ENST00000641482 4860 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
USP38Q8NB14 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 RNA5SP295-201ENST00000362655 121 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 RNA5SP42-201ENST00000364278 115 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 RNA5SP129-201ENST00000410276 118 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 HMGN1P14-201ENST00000412459 517 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 SPA17P1-201ENST00000416656 452 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.88□□□□□ -1.79
USP38Q8NB14 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 USP9YP29-201ENST00000445112 563 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 MRPS31P2-201ENST00000451581 518 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 SNRPFP4-201ENST00000456366 242 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 U3.44-201ENST00000458938 192 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 RPL23AP41-201ENST00000484754 458 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AC135721.1-201ENST00000497954 479 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
USP38Q8NB14 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.88□□□□□ -1.79
USP38Q8NB14 AL356432.3-201ENST00000568952 465 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 AC137800.2-201ENST00000574375 120 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 MIR3186-201ENST00000577404 85 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 MIR5680-201ENST00000577577 84 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AC004067.1-201ENST00000608733 700 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
USP38Q8NB14 MIR7106-201ENST00000612419 65 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AC090970.3-201ENST00000612566 866 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AC010678.1-201ENST00000614118 713 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 AL355810.1-201ENST00000614629 552 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 TAB3P1-202ENST00000452645 1634 ntBASIC3.88□□□□□ -1.79
USP38Q8NB14 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP38Q8NB14 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP38Q8NB14 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP38Q8NB14 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP38Q8NB14 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
USP38Q8NB14 RNU6-50P-201ENST00000362356 103 ntBASIC3.87□□□□□ -1.79
USP38Q8NB14 RNU4-91P-201ENST00000364778 135 ntBASIC3.87□□□□□ -1.79
USP38Q8NB14 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms