Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SHHQ15465 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SHHQ15465 AC012321.1-201ENST00000561622 1588 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC130650.2-201ENST00000618736 2403 ntBASIC2.61□□□□□ -1.99
SHHQ15465 RNU6-1249P-201ENST00000363237 111 ntBASIC2.61□□□□□ -1.99
SHHQ15465 SNORD116.1-201ENST00000365628 92 ntBASIC2.61□□□□□ -1.99
SHHQ15465 RN7SKP32-201ENST00000410167 303 ntBASIC2.61□□□□□ -1.99
SHHQ15465 RNU6-1077P-201ENST00000410506 102 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC080125.1-201ENST00000414888 684 ntBASIC2.61□□□□□ -1.99
SHHQ15465 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 HSPE1P1-201ENST00000421494 318 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 RAC1P8-201ENST00000427086 527 ntBASIC2.61□□□□□ -1.99
SHHQ15465 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AL390023.1-201ENST00000428836 262 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC109583.1-201ENST00000432156 268 ntBASIC2.61□□□□□ -1.99
SHHQ15465 CETN4P-201ENST00000432407 469 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 HSFY3P-201ENST00000444242 1191 ntBASIC2.61□□□□□ -1.99
SHHQ15465 MTATP6P26-201ENST00000445926 662 ntBASIC2.61□□□□□ -1.99
SHHQ15465 OR51B8P-201ENST00000449892 769 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 AC005410.1-202ENST00000460347 485 ntBASIC2.61□□□□□ -1.99
SHHQ15465 MTCO2P6-201ENST00000463134 685 ntBASIC2.61□□□□□ -1.99
SHHQ15465 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SHHQ15465 AC026436.1-201ENST00000510537 270 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 RNU6-416P-201ENST00000516265 103 ntBASIC2.61□□□□□ -1.99
SHHQ15465 RNA5SP76-201ENST00000516277 87 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.61□□□□□ -1.99
SHHQ15465 CKS1BP7-201ENST00000522230 235 ntBASIC2.61□□□□□ -1.99
SHHQ15465 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.61□□□□□ -1.99
SHHQ15465 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.61□□□□□ -1.99
SHHQ15465 AL133271.1-201ENST00000538229 291 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC006518.2-201ENST00000542513 940 ntBASIC2.61□□□□□ -1.99
SHHQ15465 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.61□□□□□ -1.99
SHHQ15465 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.61□□□□□ -1.99
SHHQ15465 AC087481.2-201ENST00000565492 330 ntBASIC2.61□□□□□ -1.99
SHHQ15465 MIR4498-201ENST00000577599 66 ntBASIC2.61□□□□□ -1.99
SHHQ15465 MIR4781-201ENST00000585250 76 ntBASIC2.61□□□□□ -1.99
SHHQ15465 XIAPP1-201ENST00000603162 600 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AL022161.1-201ENST00000604390 213 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC009237.15-201ENST00000610252 501 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC009318.2-201ENST00000610917 651 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AL121895.2-201ENST00000619558 447 ntBASIC2.61□□□□□ -1.99
SHHQ15465 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
SHHQ15465 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.61□□□□□ -1.99
SHHQ15465 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.61□□□□□ -1.99
SHHQ15465 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
SHHQ15465 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
SHHQ15465 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SHHQ15465 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SHHQ15465 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.6□□□□□ -1.99
SHHQ15465 RNU4-40P-201ENST00000364351 143 ntBASIC2.6□□□□□ -1.99
SHHQ15465 Y_RNA.408-201ENST00000383987 102 ntBASIC2.6□□□□□ -1.99
SHHQ15465 SNORA64-201ENST00000384674 134 ntBASIC2.6□□□□□ -1.99
SHHQ15465 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.6□□□□□ -1.99
SHHQ15465 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.6□□□□□ -1.99
SHHQ15465 AC109780.2-201ENST00000413467 845 ntBASIC2.6□□□□□ -1.99
SHHQ15465 HIGD1AP15-201ENST00000416198 280 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.6□□□□□ -1.99
SHHQ15465 RPL17P49-201ENST00000443728 411 ntBASIC2.6□□□□□ -1.99
SHHQ15465 RPL39P40-201ENST00000445481 146 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.6□□□□□ -1.99
SHHQ15465 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.6□□□□□ -1.99
SHHQ15465 CACYBPP2-201ENST00000453625 678 ntBASIC2.6□□□□□ -1.99
SHHQ15465 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.6□□□□□ -1.99
SHHQ15465 TRBV26-201ENST00000456572 344 ntBASIC2.6□□□□□ -1.99
SHHQ15465 RN7SKP210-201ENST00000459176 261 ntBASIC2.6□□□□□ -1.99
SHHQ15465 VPS26AP1-201ENST00000483197 979 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.6□□□□□ -1.99
SHHQ15465 BOLA3P3-201ENST00000505182 232 ntBASIC2.6□□□□□ -1.99
SHHQ15465 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.6□□□□□ -1.99
SHHQ15465 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.6□□□□□ -1.99
SHHQ15465 AC107222.1-201ENST00000510899 637 ntBASIC2.6□□□□□ -1.99
SHHQ15465 HSPE1P18-201ENST00000517602 280 ntBASIC2.6□□□□□ -1.99
SHHQ15465 ZNF321P-202ENST00000550843 495 ntBASIC2.6□□□□□ -1.99
SHHQ15465 MTND3P13-201ENST00000574391 343 ntBASIC2.6□□□□□ -1.99
SHHQ15465 SNORD84-203ENST00000584275 78 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC083760.1-201ENST00000589621 670 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC023043.2-201ENST00000589678 1026 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC068831.7-201ENST00000616954 363 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC098679.5-201ENST00000624394 571 ntBASIC2.6□□□□□ -1.99
SHHQ15465 AC111188.2-201ENST00000529697 1387 ntBASIC2.6□□□□□ -1.99
SHHQ15465 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SHHQ15465 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SHHQ15465 ZNF876P-202ENST00000398732 1485 ntBASIC2.59□□□□□ -1.99
SHHQ15465 SGO1P2-201ENST00000429458 1589 ntBASIC2.59□□□□□ -1.99
SHHQ15465 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
SHHQ15465 Y_RNA.118-201ENST00000363300 101 ntBASIC2.59□□□□□ -1.99
SHHQ15465 RPL21P75-201ENST00000396599 483 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms