Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 HMGB3P17-201ENST00000504195 649 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 MTCO3P44-201ENST00000510977 541 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX4Q06945 Y_RNA.715-201ENST00000517082 110 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SOX4Q06945 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC110801.1-201ENST00000623590 212 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC139713.2-214ENST00000642059 1811 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 AC116667.1-201ENST00000604855 2072 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 OR14L1P-202ENST00000641545 3009 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 EIF2AP4-201ENST00000424793 1781 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX4Q06945 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX4Q06945 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5□□□□□ -1.61
SOX4Q06945 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SOX4Q06945 AC097374.1-203ENST00000400783 485 ntBASIC5□□□□□ -1.61
SOX4Q06945 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5□□□□□ -1.61
SOX4Q06945 CKS1BP6-201ENST00000424932 240 ntBASIC5□□□□□ -1.61
SOX4Q06945 AL732292.1-201ENST00000426692 226 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC004938.1-201ENST00000438468 308 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC011816.1-201ENST00000441346 546 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC073910.1-201ENST00000445047 438 ntBASIC5□□□□□ -1.61
SOX4Q06945 GAPDHP27-201ENST00000447427 1020 ntBASIC5□□□□□ -1.61
SOX4Q06945 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5□□□□□ -1.61
SOX4Q06945 AC007967.1-201ENST00000455422 1159 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC084198.1-201ENST00000477747 402 ntBASIC5□□□□□ -1.61
SOX4Q06945 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5□□□□□ -1.61
SOX4Q06945 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5□□□□□ -1.61
SOX4Q06945 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5□□□□□ -1.61
SOX4Q06945 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5□□□□□ -1.61
SOX4Q06945 AC123786.2-201ENST00000603459 275 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC007566.2-201ENST00000603642 413 ntBASIC5□□□□□ -1.61
SOX4Q06945 MTND4LP5-201ENST00000605152 292 ntBASIC5□□□□□ -1.61
SOX4Q06945 MIR6758-201ENST00000620653 63 ntBASIC5□□□□□ -1.61
SOX4Q06945 AC007998.5-201ENST00000622938 237 ntBASIC5□□□□□ -1.61
SOX4Q06945 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
SOX4Q06945 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5□□□□□ -1.61
SOX4Q06945 AC010329.2-201ENST00000595195 2737 ntBASIC5□□□□□ -1.61
SOX4Q06945 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5□□□□□ -1.61
SOX4Q06945 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5□□□□□ -1.61
SOX4Q06945 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5□□□□□ -1.61
SOX4Q06945 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX4Q06945 SAGE4P-201ENST00000442271 3381 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 ZNF137P-201ENST00000456718 1920 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX4Q06945 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX4Q06945 AC104260.2-201ENST00000623551 3497 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 STX3-208ENST00000641815 3236 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX4Q06945 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX4Q06945 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SOX4Q06945 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX4Q06945 Y_RNA.60-201ENST00000362831 98 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 Y_RNA.126-201ENST00000363382 111 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 SNORA20.1-201ENST00000364790 130 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 SNORA23-201ENST00000365128 182 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 Y_RNA.515-201ENST00000384535 112 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 RNU4-65P-201ENST00000410473 140 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 RPL18P10-201ENST00000425606 538 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX4Q06945 AL645568.3-201ENST00000433683 316 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 SCARNA10-201ENST00000459255 330 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC008481.1-201ENST00000463278 396 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC010631.1-201ENST00000474150 156 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC108860.1-201ENST00000484521 383 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC023424.1-201ENST00000496058 459 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC105758.1-201ENST00000506038 399 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX4Q06945 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX4Q06945 MTND1P19-201ENST00000511780 315 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC092436.3-201ENST00000511788 257 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 RNA5SP249-201ENST00000516127 99 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC084783.1-201ENST00000565846 910 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SOX4Q06945 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX4Q06945 AC012603.1-201ENST00000606424 528 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 TUG1_2.1-201ENST00000614234 87 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC137590.2-201ENST00000619709 240 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC103858.2-201ENST00000621471 543 ntBASIC4.99□□□□□ -1.61
SOX4Q06945 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms