Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA3P55318 AC021851.1-201ENST00000608537 1082 ntBASIC1.48□□□□□ -2.17
FOXA3P55318 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
FOXA3P55318 AC091925.2-201ENST00000625059 256 ntBASIC1.48□□□□□ -2.17
FOXA3P55318 MTND5P6-201ENST00000422338 1798 ntBASIC1.48□□□□□ -2.17
FOXA3P55318 AC006020.1-201ENST00000420179 1854 ntBASIC1.48□□□□□ -2.17
FOXA3P55318 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA3P55318 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
FOXA3P55318 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
FOXA3P55318 U8.14-201ENST00000390843 143 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC096664.2-201ENST00000411843 406 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AL139156.1-201ENST00000412785 841 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 SPA17P1-201ENST00000416656 452 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 CYCSP48-201ENST00000417124 323 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 AC009237.2-201ENST00000421358 284 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC024082.2-201ENST00000434771 238 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 RPL23AP83-201ENST00000434984 473 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 AC124916.1-201ENST00000444020 547 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 BMI1P1-201ENST00000445879 941 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 Z82190.1-201ENST00000454534 490 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 PMCHL2-203ENST00000457791 237 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
FOXA3P55318 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 DYNLL1P5-201ENST00000467158 270 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
FOXA3P55318 SNORA31.25-201ENST00000517242 134 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 IGKV3-31-201ENST00000523109 329 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 MIR5571-201ENST00000577998 113 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 MIR5089-201ENST00000580047 84 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA3P55318 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
FOXA3P55318 DNAJC19P3-201ENST00000594491 331 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC040174.2-201ENST00000602701 465 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC004908.2-201ENST00000609090 574 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 Y_RNA.783-201ENST00000613546 102 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AC005296.1-201ENST00000616145 209 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 AL356585.4-201ENST00000623078 1229 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 LINC00216-201ENST00000623548 1126 ntBASIC1.47□□□□□ -2.17
FOXA3P55318 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
FOXA3P55318 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
FOXA3P55318 SNORA80A-201ENST00000363922 136 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 Y_RNA.333-201ENST00000365274 102 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 SNORA11-201ENST00000408789 128 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 RNU6-1328P-201ENST00000410938 106 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 XKRYP1-201ENST00000423438 492 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 XKRYP2-201ENST00000432915 492 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC1.46□□□□□ -2.18
FOXA3P55318 AL500527.1-201ENST00000448532 255 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA3P55318 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC093767.1-201ENST00000504523 156 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC104108.1-201ENST00000509930 412 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC109464.2-201ENST00000510242 943 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC022447.1-201ENST00000515358 464 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 FAM92A1P1-201ENST00000528023 890 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 ZNF705CP-201ENST00000530515 889 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC087465.1-201ENST00000560574 245 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 MIR3122-201ENST00000577243 73 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC015688.2-201ENST00000584523 262 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 VN1R88P-201ENST00000596787 292 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC090132.2-201ENST00000615881 347 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AC107905.1-201ENST00000616204 426 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA3P55318 AC103710.2-202ENST00000641454 2853 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
FOXA3P55318 AL049641.1-201ENST00000441055 1948 ntBASIC1.46□□□□□ -2.18
FOXA3P55318 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.45□□□□□ -2.18
FOXA3P55318 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.45□□□□□ -2.18
FOXA3P55318 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.45□□□□□ -2.18
FOXA3P55318 RNA5SP387-201ENST00000364226 106 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 SNORA70.4-201ENST00000365509 134 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 SNORA36C-201ENST00000384289 132 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
FOXA3P55318 AL512604.1-201ENST00000404812 257 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 ATF1P1-201ENST00000406040 927 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.45□□□□□ -2.18
FOXA3P55318 RPL31P63-201ENST00000422565 375 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 NDUFB4P7-201ENST00000423198 363 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AL356867.1-201ENST00000429623 299 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC016691.1-201ENST00000441321 413 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC126389.1-201ENST00000477436 290 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 RPL23AP41-201ENST00000484754 458 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC096576.1-201ENST00000489014 359 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms