Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SETP8-201ENST00000435341 628 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 RPL17P49-201ENST00000443728 411 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.25□□□□□ -2.05
COL18A1P39060 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.25□□□□□ -2.05
COL18A1P39060 AL137159.1-201ENST00000452808 512 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.25□□□□□ -2.05
COL18A1P39060 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.25□□□□□ -2.05
COL18A1P39060 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.25□□□□□ -2.05
COL18A1P39060 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.25□□□□□ -2.05
COL18A1P39060 AP005136.1-201ENST00000579765 429 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 AC103987.3-201ENST00000582071 292 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 AL133393.1-201ENST00000603277 287 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL18A1P39060 MFSD8-213ENST00000641134 1327 ntBASIC2.25□□□□□ -2.05
COL18A1P39060 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL18A1P39060 MTND5P31-201ENST00000419366 1374 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
COL18A1P39060 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL18A1P39060 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL18A1P39060 U8.9-201ENST00000365667 134 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
COL18A1P39060 RNU4-78P-201ENST00000410940 126 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 USP9YP6-201ENST00000413550 854 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 USP9YP34-201ENST00000453983 808 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 AC004062.1-201ENST00000509926 645 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 MTCYBP37-201ENST00000510642 1133 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 RNA5SP480-201ENST00000516840 109 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 MIR4419B-201ENST00000577260 68 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC2.24□□□□□ -2.05
COL18A1P39060 AL109653.1-201ENST00000603091 248 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 AL390240.1-201ENST00000612950 384 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 AC132825.7-201ENST00000638744 335 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL18A1P39060 MTND4P23-201ENST00000447723 1363 ntBASIC2.24□□□□□ -2.05
COL18A1P39060 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
COL18A1P39060 RNA5SP37-201ENST00000365420 130 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RNA5SP56-201ENST00000410277 118 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC114973.1-201ENST00000429057 632 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 SNRPEP4-201ENST00000435815 279 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.23□□□□□ -2.05
COL18A1P39060 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.23□□□□□ -2.05
COL18A1P39060 AC055855.1-201ENST00000489563 579 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 HMGB1P22-201ENST00000505315 124 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.23□□□□□ -2.05
COL18A1P39060 AC016542.1-201ENST00000608259 493 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.23□□□□□ -2.05
COL18A1P39060 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 MTND4P21-201ENST00000453886 1357 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 RNU6-1249P-201ENST00000363237 111 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 Y_RNA.191-201ENST00000363972 113 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RNU6-444P-201ENST00000383988 108 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RN7SKP101-201ENST00000411376 320 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RPL19P1-201ENST00000411635 428 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 DPPA2P1-201ENST00000428060 556 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.23□□□□□ -2.05
COL18A1P39060 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.23□□□□□ -2.05
COL18A1P39060 MTND2P3-201ENST00000452458 470 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 TPRKBP1-201ENST00000456243 481 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RPS15AP1-201ENST00000457423 391 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC010301.1-201ENST00000473936 355 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC108729.2-201ENST00000476543 840 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC087190.1-201ENST00000484462 480 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RNU1-40P-201ENST00000516816 164 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 RNU1-97P-201ENST00000516872 164 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.23□□□□□ -2.05
COL18A1P39060 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 AC104229.1-201ENST00000561364 255 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC034268.2-201ENST00000571784 482 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 WISP1-OT1-201ENST00000602893 642 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AC013444.2-201ENST00000603317 787 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 AL590099.1-201ENST00000615276 138 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.23□□□□□ -2.05
COL18A1P39060 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 AC073055.1-201ENST00000456901 1621 ntBASIC2.23□□□□□ -2.05
COL18A1P39060 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL18A1P39060 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL18A1P39060 RNU6-796P-201ENST00000391086 107 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL18A1P39060 UBE2V1P15-201ENST00000407776 448 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 AL590084.1-201ENST00000407885 387 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.22□□□□□ -2.05
COL18A1P39060 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.22□□□□□ -2.05
COL18A1P39060 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.22□□□□□ -2.05
COL18A1P39060 ARPC3P1-201ENST00000437218 533 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 MOB1AP2-201ENST00000446060 614 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 HMGN2P13-201ENST00000476476 274 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.22□□□□□ -2.05
COL18A1P39060 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.22□□□□□ -2.05
COL18A1P39060 AC010468.3-201ENST00000508225 458 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 SNORD59.2-201ENST00000516873 68 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.22□□□□□ -2.05
COL18A1P39060 AC026616.1-201ENST00000523157 525 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms