Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPL21P104-201ENST00000464143 478 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 PLGLA-201ENST00000465668 449 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC006512.1-201ENST00000468816 291 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 RPL23AP65-201ENST00000475608 468 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A1P12109 AC055855.1-201ENST00000489563 579 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 AC093767.1-201ENST00000504523 156 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 AC110768.1-201ENST00000509222 400 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC114797.1-201ENST00000514003 728 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 AP005597.4-201ENST00000526762 229 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.69□□□□□ -1.66
COL6A1P12109 OR5BN1P-201ENST00000532955 829 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.69□□□□□ -1.66
COL6A1P12109 RPL21P12-201ENST00000559810 515 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A1P12109 AC006504.6-201ENST00000590142 199 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 KC877982.1-201ENST00000602313 470 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC008013.2-202ENST00000637965 364 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A1P12109 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 AC011460.1-201ENST00000636268 1834 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A1P12109 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A1P12109 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 AC008725.1-201ENST00000605123 2263 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A1P12109 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A1P12109 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A1P12109 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A1P12109 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A1P12109 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
COL6A1P12109 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A1P12109 RNA5SP258-201ENST00000362750 119 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 Y_RNA.100-201ENST00000363141 102 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 Y_RNA.184-201ENST00000363884 108 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 Y_RNA.234-201ENST00000364409 97 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL6A1P12109 PTMAP5-201ENST00000393073 333 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 MIR1271-201ENST00000408537 86 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RNA5SP56-201ENST00000410277 118 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 VDAC1P9-201ENST00000412766 841 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC012065.2-201ENST00000421295 375 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A1P12109 RPS20P5-201ENST00000434808 360 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A1P12109 AL031584.1-201ENST00000447169 754 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RPL7P52-201ENST00000449200 742 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 PPP1R2P5-201ENST00000457256 603 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RNU6-329P-201ENST00000459618 107 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 GMFBP1-201ENST00000467831 427 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 VWA8P1-201ENST00000510889 176 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC105417.1-201ENST00000514691 285 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RNU6-1170P-201ENST00000515974 106 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RNU4-49P-201ENST00000516080 140 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 RN7SKP256-201ENST00000517201 314 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.68□□□□□ -1.66
COL6A1P12109 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 SCOCP1-201ENST00000554676 349 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 MIR3671-201ENST00000580455 88 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC060771.1-201ENST00000582031 164 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC105224.1-201ENST00000587055 421 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.68□□□□□ -1.66
COL6A1P12109 uc_338.12-201ENST00000616344 181 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A1P12109 AC134503.1-201ENST00000633048 54 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A1P12109 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL6A1P12109 Z82217.1-201ENST00000625157 8149 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.68□□□□□ -1.66
COL6A1P12109 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL6A1P12109 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A1P12109 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
COL6A1P12109 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A1P12109 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL6A1P12109 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.67□□□□□ -1.66
COL6A1P12109 USP8P1-201ENST00000494673 3183 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 Y_RNA.231-201ENST00000364358 102 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 Y_RNA.422-201ENST00000384054 114 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 MIR34B-201ENST00000385076 84 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL6A1P12109 RNU4-6P-201ENST00000410804 122 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms