Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.67□□□□□ -1.98
NPHP4O75161 MTCO1P6-201ENST00000481192 1384 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 Z82209.1-201ENST00000422141 2135 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
NPHP4O75161 ZNF720P1-201ENST00000562403 1939 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NPHP4O75161 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NPHP4O75161 RNU6-1249P-201ENST00000363237 111 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 RNU1-101P-201ENST00000391171 127 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
NPHP4O75161 SFR1P1-201ENST00000403720 688 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
NPHP4O75161 MIR1294-201ENST00000408503 142 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.66□□□□□ -1.98
NPHP4O75161 AF274854.1-201ENST00000413236 615 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 HMGN2P20-201ENST00000437531 273 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 RPL23AP16-201ENST00000441715 421 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 GXYLT1P1-201ENST00000446657 490 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.66□□□□□ -1.98
NPHP4O75161 MTND3P24-201ENST00000506306 329 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC025768.1-201ENST00000510057 267 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 SNORA31.11-201ENST00000516528 139 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.66□□□□□ -1.98
NPHP4O75161 MTCO3P24-201ENST00000572729 782 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 SNORD39.3-201ENST00000584451 71 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.66□□□□□ -1.98
NPHP4O75161 AL035411.2-201ENST00000604022 421 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC011890.2-201ENST00000613393 294 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 MIR6504-201ENST00000613520 61 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AL445493.3-201ENST00000619568 477 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 AC006963.1-201ENST00000624003 1052 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.66□□□□□ -1.98
NPHP4O75161 AC244517.1-201ENST00000606030 2086 ntBASIC2.66□□□□□ -1.98
NPHP4O75161 MIR649-201ENST00000384843 97 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 RNU6-837P-201ENST00000391056 108 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 AC079780.1-201ENST00000428259 207 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.65□□□□□ -1.99
NPHP4O75161 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.65□□□□□ -1.99
NPHP4O75161 AL096803.2-201ENST00000450032 677 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 RPL7P55-201ENST00000450522 746 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 NAP1L1P3-201ENST00000462291 880 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 AC073901.1-201ENST00000462471 408 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.65□□□□□ -1.99
NPHP4O75161 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.65□□□□□ -1.99
NPHP4O75161 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.65□□□□□ -1.99
NPHP4O75161 AL109653.1-201ENST00000603091 248 ntBASIC2.65□□□□□ -1.99
NPHP4O75161 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 BTBD7P2-201ENST00000441962 620 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 AC010301.1-201ENST00000473936 355 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 PRELID3BP4-201ENST00000515476 571 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NPHP4O75161 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.64□□□□□ -1.99
NPHP4O75161 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NPHP4O75161 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.64□□□□□ -1.99
NPHP4O75161 PRELID2P1-201ENST00000552837 301 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 SETP2-201ENST00000553886 926 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.64□□□□□ -1.99
NPHP4O75161 AC074051.3-201ENST00000570238 358 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.64□□□□□ -1.99
NPHP4O75161 AL671309.1-201ENST00000603750 544 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 AL049779.4-201ENST00000604500 156 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.64□□□□□ -1.99
NPHP4O75161 AC018755.4-201ENST00000619715 454 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.64□□□□□ -1.99
NPHP4O75161 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.64□□□□□ -1.99
NPHP4O75161 AC111188.2-201ENST00000529697 1387 ntBASIC2.64□□□□□ -1.99
NPHP4O75161 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
NPHP4O75161 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NPHP4O75161 AC010733.2-201ENST00000589496 5702 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
NPHP4O75161 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.63□□□□□ -1.99
NPHP4O75161 RPL19P1-201ENST00000411635 428 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 HSPE1P1-201ENST00000421494 318 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 HSFY3P-201ENST00000444242 1191 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 CBWD4P-201ENST00000445695 655 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 HMGN2P13-201ENST00000476476 274 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 RNU1-61P-201ENST00000516107 151 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 RNA5SP480-201ENST00000516840 109 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 RN7SKP40-201ENST00000517211 242 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.63□□□□□ -1.99
NPHP4O75161 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.63□□□□□ -1.99
NPHP4O75161 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.63□□□□□ -1.99
NPHP4O75161 BPTFP1-201ENST00000579209 492 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 RPL23AP78-201ENST00000599928 470 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 WISP1-OT1-201ENST00000602893 642 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 RPP40P2-201ENST00000603596 712 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 AC019159.1-201ENST00000605094 187 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 uc_338.5-201ENST00000611839 155 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
NPHP4O75161 AC073055.1-201ENST00000456901 1621 ntBASIC2.63□□□□□ -1.99
NPHP4O75161 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
NPHP4O75161 RNU2-20P-201ENST00000410425 191 ntBASIC2.62□□□□□ -1.99
NPHP4O75161 AC004965.1-201ENST00000413033 213 ntBASIC2.62□□□□□ -1.99
NPHP4O75161 AC109780.2-201ENST00000413467 845 ntBASIC2.62□□□□□ -1.99
NPHP4O75161 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms