Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
LMX1BO60663 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LMX1BO60663 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LMX1BO60663 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 AC010733.2-201ENST00000589496 5702 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 XIAPP3-201ENST00000312918 795 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 CBX3P1-201ENST00000325243 554 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RNU6-451P-201ENST00000362921 107 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RNA5SP72-201ENST00000364442 117 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 SNORA9-201ENST00000384215 133 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 Y_RNA.573-201ENST00000384763 105 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AL391417.1-201ENST00000404100 426 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RNU2-8P-201ENST00000410727 190 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.26□□□□□ -1.89
LMX1BO60663 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 MTATP6P18-201ENST00000417994 673 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC068533.1-201ENST00000418542 415 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RPS15AP40-201ENST00000419621 391 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.26□□□□□ -1.89
LMX1BO60663 RPL30P3-201ENST00000424262 333 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 GTF2IP20-201ENST00000431663 360 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RPL7P28-201ENST00000437739 740 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AL136380.1-201ENST00000447970 162 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 NANOGP10-201ENST00000453325 895 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC022364.2-201ENST00000457963 554 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RPL36AP51-201ENST00000487216 318 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 MTCO2P30-201ENST00000503662 364 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 AC046134.1-201ENST00000514454 666 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RNU6-1281P-201ENST00000516223 105 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RN7SKP209-201ENST00000516888 304 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 IGKV2D-19-201ENST00000523346 262 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AF235103.2-201ENST00000525753 346 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 OR4P1P-201ENST00000530808 1136 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AP000889.1-201ENST00000530968 660 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.26□□□□□ -1.89
LMX1BO60663 YWHAQP7-201ENST00000603536 658 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC025588.3-201ENST00000604182 274 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC007621.1-201ENST00000604544 437 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 RMST_3.1-201ENST00000611651 109 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 uc_338.32-201ENST00000615087 172 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 AC015967.1-201ENST00000619893 476 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 FER-210ENST00000628534 558 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 MIR3662-201ENST00000637030 95 ntBASIC3.26□□□□□ -1.89
LMX1BO60663 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
LMX1BO60663 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LMX1BO60663 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.26□□□□□ -1.89
LMX1BO60663 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
LMX1BO60663 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.25□□□□□ -1.89
LMX1BO60663 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 AC032011.1-201ENST00000611703 1549 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC073346.2-201ENST00000624724 2058 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 NMD3P1-201ENST00000439704 1488 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 Y_RNA.61-201ENST00000362835 102 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 Y_RNA.279-201ENST00000364763 95 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LMX1BO60663 U8.11-201ENST00000384699 133 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 U8.12-201ENST00000384701 133 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
LMX1BO60663 RNU6-1158P-201ENST00000391167 107 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 RPL7P60-201ENST00000397636 735 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 MRPL42P2-201ENST00000403169 426 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AL356776.1-201ENST00000406574 447 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 RPS29P4-201ENST00000414733 161 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC245054.1-201ENST00000420944 258 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 MTND4P28-201ENST00000426217 387 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC091390.3-201ENST00000426478 338 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC006548.1-201ENST00000427470 102 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 HMGN2P31-201ENST00000432430 273 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC108734.1-201ENST00000439549 399 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 RPL7P52-201ENST00000449200 742 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 HMGB3P21-201ENST00000452483 547 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 U8.18-201ENST00000459285 133 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 RPL37P6-202ENST00000464216 403 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AP000926.1-201ENST00000479573 241 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 AC021382.1-201ENST00000483523 359 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 RPL39P36-201ENST00000490784 156 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 OR5H5P-201ENST00000503164 928 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 AC021146.1-201ENST00000511202 716 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.25□□□□□ -1.89
LMX1BO60663 SNORA74D-201ENST00000516404 141 ntBASIC3.25□□□□□ -1.89
LMX1BO60663 SCARNA14-201ENST00000516903 136 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms