Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC073073.2-201ENST00000609827 2578 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 U3.15-201ENST00000365398 212 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 SNORA62-201ENST00000365493 153 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC002075.2-201ENST00000425207 252 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC007967.1-201ENST00000455422 1159 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC026801.2-201ENST00000515352 425 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 OR4R1P-201ENST00000529879 463 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 GLUD1P4-201ENST00000590914 418 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AL590392.1-201ENST00000604960 446 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 FP236240.3-201ENST00000623061 327 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 RNA5SP196-201ENST00000625967 102 ntBASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LIMCH1Q9UPQ0 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AL645937.1-201ENST00000641739 1652 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MIR423-201ENST00000362201 94 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-483P-201ENST00000384088 108 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MIR135A2-201ENST00000384854 100 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-780P-201ENST00000391030 104 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 USP9YP6-201ENST00000413550 854 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MTCO3P12-201ENST00000416718 547 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MRPL50P2-201ENST00000416821 482 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AL353193.1-201ENST00000421444 268 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC244098.2-201ENST00000422068 99 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 FTH1P6-201ENST00000430768 320 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 HSFY6P-201ENST00000445573 403 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC114797.1-201ENST00000514003 728 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 SCARNA24.1-201ENST00000516465 137 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RNU7-51P-201ENST00000516560 62 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC100870.1-201ENST00000522035 505 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC008011.1-201ENST00000545989 227 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 CYCSP30-201ENST00000546447 172 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 CBX3P5-201ENST00000552017 521 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MIR4738-201ENST00000579134 87 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 MIR548S-201ENST00000581352 82 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AL162413.1-201ENST00000603198 110 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC007621.1-201ENST00000604544 437 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 Z84480.1-201ENST00000605131 311 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 uc_338.32-201ENST00000615087 172 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 AC106871.1-201ENST00000568324 3102 ntBASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.36□□□□□ -1.71
LIMCH1Q9UPQ0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-511P-201ENST00000363496 107 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNU5E-8P-201ENST00000363502 116 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNA5SP283-201ENST00000365604 119 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC068538.1-201ENST00000376856 336 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-877P-201ENST00000383868 107 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 MIR558-201ENST00000384920 94 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 MTHFD2P2-201ENST00000407725 247 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNU2-43P-201ENST00000410306 190 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNA5SP107-201ENST00000411358 122 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 MED13P1-201ENST00000428342 171 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RPL7P54-201ENST00000438336 674 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC005094.1-201ENST00000440420 368 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 DDX3P2-201ENST00000446138 111 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms