Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SETP5-201ENST00000437270 562 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 BTF3P5-201ENST00000457252 467 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 RPL23AP12-201ENST00000467573 473 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 HMGB3P15-201ENST00000507326 574 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 PHBP14-201ENST00000512887 367 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 RNU6-764P-201ENST00000516396 105 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC104986.1-201ENST00000517978 436 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 PHBP17-201ENST00000528576 541 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AP003034.1-201ENST00000534621 422 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC069240.1-201ENST00000548774 375 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 RRN3P3-201ENST00000549207 578 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 ATP1B3P1-201ENST00000605365 821 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC097468.3-201ENST00000607956 456 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AL451049.1-201ENST00000608672 497 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 MIR7154-201ENST00000620673 73 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC092447.10-201ENST00000620607 1652 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 AC006378.2-201ENST00000623178 2476 ntBASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
COL17A1Q9UMD9 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL17A1Q9UMD9 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
COL17A1Q9UMD9 SNRPEP3-201ENST00000338402 276 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU2-28P-201ENST00000410457 189 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RPL23AP20-201ENST00000447965 421 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RPL36AP51-201ENST00000487216 318 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SUMO2P4-201ENST00000504193 276 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC018797.3-201ENST00000513388 1241 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU2-27P-201ENST00000516185 142 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC093591.2-201ENST00000565254 3843 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 MIR548AI-201ENST00000579940 88 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 BNIP3P16-201ENST00000589779 534 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AP001330.4-201ENST00000604350 154 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC096772.1-201ENST00000609146 564 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC083843.3-201ENST00000623679 2186 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU6-238P-201ENST00000363313 106 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 Y_RNA.148-201ENST00000363557 117 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU6-1297P-201ENST00000384415 104 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU6-225P-201ENST00000384613 103 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 UBE2V1P2-201ENST00000397758 440 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU6-1148P-201ENST00000410992 104 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 RNU6-373P-201ENST00000411247 98 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 MTCO3P19-201ENST00000415864 321 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AL137792.2-201ENST00000443484 235 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC079448.1-201ENST00000449377 373 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 GZMAP1-201ENST00000503054 631 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 MIR4742-201ENST00000581069 85 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC062037.2-201ENST00000610137 73 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 MIR6715A-201ENST00000615929 79 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC244517.12-201ENST00000623581 663 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC006386.2-201ENST00000624491 75 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 AC012005.1-201ENST00000624575 75 ntBASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
COL17A1Q9UMD9 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 AL365440.1-201ENST00000436135 2167 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 SNORD9-201ENST00000362566 104 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 SNORD35B-201ENST00000363660 87 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 Y_RNA.381-201ENST00000365666 102 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 Y_RNA.574-201ENST00000384766 95 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 MIR199A2-201ENST00000385289 110 ntBASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.82□□□□□ -1.48
COL17A1Q9UMD9 RNU6-195P-201ENST00000411352 109 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms