Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 GPM6BP1-201ENST00000446387 144 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 SCARNA18-201ENST00000459004 134 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC008481.1-201ENST00000463278 396 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 HIGD1AP13-201ENST00000509878 289 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC093303.1-201ENST00000514549 295 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP497-201ENST00000516081 97 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 RNU6-273P-201ENST00000516937 96 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 SNRPGP18-201ENST00000553000 214 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 TVP23BP1-201ENST00000557500 617 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC106782.4-201ENST00000568264 210 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MIR5583-1-201ENST00000580941 59 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC023043.2-201ENST00000589678 1026 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC174048.1-201ENST00000603389 144 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC136443.5-201ENST00000603741 370 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AC104662.1-201ENST00000604448 511 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MIR6875-201ENST00000617506 72 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 AL445363.3-201ENST00000623080 671 ntBASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC87Q9NVE4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC090971.4-201ENST00000560291 1800 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MTND5P10-201ENST00000603719 1809 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 PCAT14-202ENST00000627127 3935 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 SNORD46.1-201ENST00000364139 104 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 Y_RNA.482-201ENST00000384377 111 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 UBE2V1P2-201ENST00000397758 440 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC245054.2-201ENST00000415639 319 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL391219.1-201ENST00000422570 483 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC007389.2-201ENST00000434630 306 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MRPL48P1-201ENST00000445390 636 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL162151.2-201ENST00000448875 158 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 HMGB3P22-202ENST00000451823 572 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL121576.1-201ENST00000556055 276 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MIR3672-201ENST00000584290 82 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC008521.1-201ENST00000587471 187 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC008737.2-201ENST00000599446 118 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC008739.3-201ENST00000603262 127 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL138889.2-201ENST00000603883 242 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC133104.2-201ENST00000615272 193 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC110801.1-201ENST00000623590 212 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AL078596.1-201ENST00000624856 447 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MIR4275-201ENST00000636486 87 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC008013.2-202ENST00000637965 364 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 AC011755.1-201ENST00000623763 2049 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MTND5P16-201ENST00000460269 1703 ntBASIC5.6□□□□□ -1.51
CCDC87Q9NVE4 MAPK10-304ENST00000641341 3984 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AL031595.2-201ENST00000624215 19071 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 SNORA71.3-201ENST00000362582 128 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 Y_RNA.333-201ENST00000365274 102 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 RNU6-946P-201ENST00000383878 107 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AL137014.1-201ENST00000420490 1226 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 HMGB3P21-201ENST00000452483 547 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 Y_RNA.653-201ENST00000459091 95 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 RPS27P27-201ENST00000498779 255 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC146944.2-203ENST00000502493 354 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC079140.5-201ENST00000507882 310 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC139495.1-202ENST00000513164 354 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 RN7SKP234-201ENST00000517173 224 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC022634.1-201ENST00000520765 532 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC135001.1-201ENST00000544546 283 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 MIR4472-2-201ENST00000582069 67 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC067852.4-201ENST00000590314 478 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 XIAPP1-201ENST00000603162 600 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC022893.3-201ENST00000607665 437 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC007998.5-201ENST00000622938 237 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 AC073136.1-201ENST00000449426 2884 ntBASIC5.59□□□□□ -1.51
CCDC87Q9NVE4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.59□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms