Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL356968.1-201ENST00000416622 474 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 MTCO2P20-201ENST00000437339 673 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL591503.2-201ENST00000442314 1005 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 RPS3AP12-201ENST00000443616 753 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 ELOCP30-201ENST00000447108 299 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC104978.1-201ENST00000449387 391 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC109925.1-201ENST00000478069 331 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 RPS15AP36-201ENST00000492022 382 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AP000857.1-201ENST00000532151 543 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL157394.1-201ENST00000562983 1224 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 MIR4425-201ENST00000580572 84 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL355877.2-201ENST00000603670 358 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 YPEL5P2-201ENST00000605553 359 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC034102.8-201ENST00000615146 484 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 FAM133CP-201ENST00000332869 704 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 RNU6-723P-201ENST00000383973 107 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 MIR184-201ENST00000384962 84 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 FO393413.1-201ENST00000402892 195 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AC096649.2-201ENST00000416186 393 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 MTCO2P23-201ENST00000425216 680 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 UBE2FP3-201ENST00000436366 524 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 Z99127.3-201ENST00000448158 395 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 ANKRD26P4-201ENST00000455755 950 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 RPL26P9-201ENST00000457466 433 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AC006518.1-201ENST00000541449 943 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 MIR5680-201ENST00000577577 84 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AC136601.2-201ENST00000604356 474 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AP000484.1-201ENST00000620067 1252 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AC097655.1-201ENST00000635075 318 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 MTND5P27-201ENST00000428871 1720 ntBASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.23□□□□□ -1.73
CHMP4AQ9BY43 AL161431.1-201ENST00000618966 4205 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 MIR208A-201ENST00000362287 71 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 BX323014.1-201ENST00000412876 237 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC091390.3-201ENST00000426478 338 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC005300.1-201ENST00000428401 373 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 UBBP3-201ENST00000445497 241 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 DDX3P2-201ENST00000446138 111 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC020550.1-201ENST00000447385 163 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 SNORA31.18-201ENST00000517043 134 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 HSPE1P20-201ENST00000538133 289 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AL133153.1-201ENST00000557756 303 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 MIR5004-201ENST00000579078 107 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 UBE2L4-201ENST00000587688 464 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 MTCO2P2-201ENST00000591258 225 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC004696.1-201ENST00000614345 607 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AL449363.1-201ENST00000617815 186 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 SNHG22-203ENST00000617833 660 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AL158801.5-201ENST00000623123 465 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 AC073476.4-201ENST00000628409 72 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 MTND5P29-201ENST00000458676 1807 ntBASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.22□□□□□ -1.73
CHMP4AQ9BY43 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 RNU6-55P-201ENST00000411092 107 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 RNU6-954P-201ENST00000411355 107 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 NDUFS5P4-201ENST00000412983 318 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 RPL21P24-201ENST00000413752 448 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms